PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G541000.1.p
Common NameSb01g050320, SORBIDRAFT_01g050320
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 430aa    MW: 45888 Da    PI: 7.1372
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G541000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61.1e-11372420348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                           +W+  E+e l ++v+q+G+g+Wk I    +    gRt+ ++k++w++ +
  Sobic.001G541000.1.p 372 KWSMFEEETLRKGVEQYGMGNWKGILDNNPdvfMGRTPVDLKDKWRNMK 420
                           79999*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-13364421IPR009057Homeodomain-like
PROSITE profilePS5129415.121365424IPR017930Myb domain
SMARTSM007174.3E-7369422IPR001005SANT/Myb domain
CDDcd116602.34E-19371421No hitNo description
SuperFamilySSF466894.21E-15371424IPR009057Homeodomain-like
PfamPF002492.3E-9372420IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MPPVTPGQAT LILDHVLGDP SLPAAVAKAL LAALPHPSDP TPRLCRAVVL RALAADPVSE  60
TSLQNLHFLA SLTASPSAAA SRIATAHIAV AAFLAASAPD FDAAAMKLFE RPSGRVRRAV  120
DEGGPLASDV AMATVDQFEA AVGNSSSQTI LRGLWGNRAA AEDRVRDLVA AEWAAIGPSK  180
LVTAAERIVG DGALETWRAA DEVTRAKLRI LAGEEKTREI LAKLEETTSS ANPISTPAFE  240
KMIDALKTSC ADLHSVVEDP LPAAKAVADE VLAARMDKGV SLNAEELGGQ PTACGAAGPS  300
TLNDKDHGPS RGKRQNLMDR NPTARTSQWD DSPDLEGSES SSPRLQLPSP RRIPPSPLPP  360
PENKSNRRRA RKWSMFEEET LRKGVEQYGM GNWKGILDNN PDVFMGRTPV DLKDKWRNMK  420
RLGYQQPRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G541000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302231.10.0uncharacterized protein LOC8081546
TrEMBLC5WMS30.0C5WMS3_SORBI; Uncharacterized protein
STRINGSb01g050320.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Representative plantOGRP15031424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-10MYB_related family protein