PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G008600.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 221aa    MW: 23783.7 Da    PI: 8.2748
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G008600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.36.5e-331067259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                          +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  Sobic.002G008600.3.p 10 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVVTTYEGQHCHH 67
                          8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-31268IPR003657WRKY domain
SuperFamilySSF1182903.53E-28367IPR003657WRKY domain
PROSITE profilePS5081129.654469IPR003657WRKY domain
SMARTSM007741.6E-38968IPR003657WRKY domain
PfamPF031064.8E-261067IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MTKSDVDHLE DGYRWRKYGQ KAVKNSPFPR SYYRCTNSKC TVKKRVERSS DDPSVVVTTY  60
EGQHCHHTVA FPRAHHLHAA LAAAGHHHMP FNFSAAAHHH HLYGTTSGVV TDHGHLPPLL  120
LPTTPAPQHN ALNDSDNNGS PLACRTSTTT SSLLRPLDCN HQELLLAAAA SYPLSSSAAM  180
SSMPVPSMST TTTTSLPPPA SSAVDKGLLD DMVPPAMRHG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26166974Probable WRKY transcription factor 4
2lex_A3e-26166974Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G008600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1846837e-68KF184683.1 Saccharum hybrid cultivar R570 clone BAC 109M04 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308556.11e-160uncharacterized protein LOC8054521
TrEMBLA0A1B6Q8N51e-160A0A1B6Q8N5_SORBI; Uncharacterized protein
STRINGSb02g000960.11e-102(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-46WRKY DNA-binding protein 57