PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G018250.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 238aa    MW: 27098.4 Da    PI: 9.0604
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G018250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA231.1e-072181531
                  GATA 15 gpdgnktLCnaCGlyyr 31
                          gp g++tLCnaCG++yr
  Sobic.002G018250.1.p  2 GPLGKSTLCNACGVRYR 18
                          899*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.107.6E-4219IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGPLGKSTLC NACGVRYRAS PTFNQPKHSY NRLVPEYRSR ESPMFDQSEH SYKHREVLKI  60
RKKQEHPAPP KTRRITNLHK TSLPRIIDNE LLAWPVFSFL PVPDEVRPGS TSCRYLLLDD  120
SPTWKLLFLL PPPPFQFLPL PPPPSFRFLT NCCMIHYNGS YCSNCMVCNN GLCGICWKAG  180
LPRLGQVFDW PSFPKQHQVS DWLVILISGC QIGNWFTPTH GYQIANQFSP THGCQIG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G018250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1W0W1Y71e-175A0A1W0W1Y7_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-13GATA transcription factor 4