PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G021300.1.p
Common NameSb02g001970, SORBIDRAFT_02g001970
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 244aa    MW: 25148.2 Da    PI: 8.8205
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G021300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.49.6e-11116165150
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                           e++l+r +rk++NRe+ArrsR+R++++ eeL + +++L a+++aL+ ++ 
  Sobic.002G021300.1.p 116 EERLRRMKRKISNRESARRSRARRRQRAEELGRAAESLRAQRRALAAKAG 165
                           789******************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-7112164No hitNo description
SMARTSM003381.3E-5116180IPR004827Basic-leucine zipper domain
PfamPF001704.2E-7116164IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.519118163IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-5120165No hitNo description
PROSITE patternPS000360123138IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MLSLDEAMQL DGFAAGLPLL PDDMDAVGFA FDDFDFNFNF EATTTAGDAG GGFHFDATAT  60
CGDAGGGGGG GFDFDTRTTA CGASPVGAAS LPTTPPPPSD GTAGARAAAD EVDDEEERLR  120
RMKRKISNRE SARRSRARRR QRAEELGRAA ESLRAQRRAL AAKAGAAAAR AMAVRLDNAR  180
LHAEARALRR RLGDAQRHAV LLLAVARARL ARAGVGVGAG VSVPAPQQVA GGVVAAAGTM  240
MTW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G021300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459298.25e-61bZIP transcription factor 60
TrEMBLC5X8P51e-166C5X8P5_SORBI; Uncharacterized protein
STRINGSb02g001970.11e-167(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3211444