PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G027401.1.p
Common NameSb02g002430, SORBIDRAFT_02g002430
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25482.5 Da    PI: 6.0437
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G027401.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.63.8e-141359349
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          i n+  r  tf kRr+g+ K A  LS+L++a++a+++ s++gk+  +
  Sobic.002G027401.1.p 13 IRNNNSRRATFFKRRAGLYKAAADLSTLTGARIAIVLESENGKMSSF 59
                          88999999************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-12162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.255363IPR002100Transcription factor, MADS-box
CDDcd001202.34E-17462No hitNo description
PRINTSPR004044.0E-9525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-16672IPR002100Transcription factor, MADS-box
PfamPF003195.0E-171359IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-92540IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-94061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MARTPRRAGI HYIRNNNSRR ATFFKRRAGL YKAAADLSTL TGARIAIVLE SENGKMSSFG  60
TPSASAIANS FLSGDAQVDP FVNQVQQDKI TNLQNELFMV EKERTMEEKR TKENIARIKE  120
LRATSRKAKL VYSKVEDLNV EELSELLHDL SRVKQEINND QLLPPQQPSN QQLSNQLEVE  180
PELHPTAQPE NHASSGDFTA DHPIFSIDQW PSPIQSDGPF FDAFMD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G027401.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815418.17e-57agamous-like MADS-box protein AGL62
TrEMBLA0A1B6Q8V31e-166A0A1B6Q8V3_SORBI; Uncharacterized protein
STRINGSb02g002430.11e-123(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Representative plantOGRP9531413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.15e-12AGAMOUS-like 64