PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G038500.4.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YA
Protein Properties Length: 230aa    MW: 24875.3 Da    PI: 10.1055
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G038500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA86.34.5e-2785144158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk..ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           dep+YVNaKQ+++Il+RR +Rak++ +++     + rkpy+heSRh hAlrR+Rg+gGrF
  Sobic.002G038500.4.p  85 DEPVYVNAKQFNGILRRRLARAKAACRDRrvSGGNRRKPYMHESRHLHALRRARGTGGRF 144
                           79***********************976643235789**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-2883147IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.984147IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.2E-2486144IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-2187109IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-21121144IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAVSTCPLGN PCTNAIPDHH SYGTASYYPF YGAHALVCIC HTDPFCLGCF STRLVSHHSI  60
YFYICKKKKK MKHGRVLLPP AIAADEPVYV NAKQFNGILR RRLARAKAAC RDRRVSGGNR  120
RKPYMHESRH LHALRRARGT GGRFLNTRSR DDGDPHKPPN EGSAASNKAK AKAAAAAATR  180
LQQQEDRQAD ALFLSSLVNV AGGDGDGGEA TAWPGCSAPS RGCCDLLRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-1685146261HAPB protein
4g92_A1e-1685146261HAPB protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G038500.4.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9682179e-89EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
GenBankEU9750239e-89EU975023.1 Zea mays clone 465284 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461481.24e-93nuclear transcription factor Y subunit A-10
TrEMBLA0A1W0W2501e-168A0A1W0W250_SORBI; Uncharacterized protein
STRINGSb02g003320.17e-94(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-18nuclear factor Y, subunit A10