PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G038500.6.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YA
Protein Properties Length: 194aa    MW: 20627.1 Da    PI: 10.2438
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G038500.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA86.83.2e-2749108158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk..ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           dep+YVNaKQ+++Il+RR +Rak++ +++     + rkpy+heSRh hAlrR+Rg+gGrF
  Sobic.002G038500.6.p  49 DEPVYVNAKQFNGILRRRLARAKAACRDRrvSGGNRRKPYMHESRHLHALRRARGTGGRF 108
                           79***********************976643235789**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-2847111IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.948111IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.8E-2450108IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.7E-215173IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.7E-2185108IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAVSTCPLGN PCTNAIPDHH SYGTASYYPF YGAHALHGRV LLPPAIAADE PVYVNAKQFN  60
GILRRRLARA KAACRDRRVS GGNRRKPYMH ESRHLHALRR ARGTGGRFLN TRSRDDGDPH  120
KPPNEGSAAS NKAKAKAAAA AATRLQQQED RQADALFLSS LVNVAGGDGD GGEATAWPGC  180
SAPSRGCCDL LRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A5e-1749110261HAPB protein
4g92_A5e-1749110261HAPB protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G038500.6.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9682171e-104EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461481.21e-128nuclear transcription factor Y subunit A-10
TrEMBLA0A1W0W2311e-138A0A1W0W231_SORBI; Uncharacterized protein
STRINGSb02g003320.11e-129(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.12e-20nuclear factor Y, subunit A2