PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G039400.1.p
Common NameSb02g003390, SORBIDRAFT_02g003390
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family YABBY
Protein Properties Length: 170aa    MW: 18895.2 Da    PI: 9.0545
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G039400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY227.72.9e-7021592170
                 YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee 90 
                           + +++se+ Cyv+Cn+Cntil+v+vP+++++++vtv+CGhCt++ls++l+ ++q+  ++ +      ++++++++++ +n+ s++++++
  Sobic.002G039400.1.p   2 SAQFASEHACYVNCNYCNTILVVNVPNSCSHNIVTVKCGHCTMVLSMDLSPFHQQARTVPD------NQVVQNRGFQYNNFGSYEQASS 84 
                           67899***********************************************987766664......689**************99999 PP

                 YABBY  91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                            + ++ s++++s+n+ +    vpp irPPekrqrvPsaynrfikeeiqrik+snP+ishreafsaaaknWah+P++hfgl
  Sobic.002G039400.1.p  85 RNLRTPSMYSVSNNQPQ----VPP-IRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 159
                           99999999887777644....455.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.6E-626159IPR006780YABBY protein
SuperFamilySSF470951.44E-8101153IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.109.6E-6107153IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010158Biological Processabaxial cell fate specification
GO:0048833Biological Processspecification of floral organ number
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSAQFASEHA CYVNCNYCNT ILVVNVPNSC SHNIVTVKCG HCTMVLSMDL SPFHQQARTV  60
PDNQVVQNRG FQYNNFGSYE QASSRNLRTP SMYSVSNNQP QVPPIRPPEK RQRVPSAYNR  120
FIKEEIQRIK TSNPEISHRE AFSAAAKNWA HLPRLHFGLS VADGGGGSN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.99640.0ovary
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected throughout panicle development with the strongest expression in immature panicles, and weakest in mature panicles. Abundantly found in the stamen and carpel primordia of young spikelets. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17216490}.
UniprotTISSUE SPECIFICITY: Preferentially expressed in flowers. Expressed in leaf blades and leaf sheaths. Does not show polar expression pattern. {ECO:0000269|PubMed:15604733}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G039400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9631490.0EU963149.1 Zea mays clone 258350 protein YABBY mRNA, complete cds.
GenBankEU9706580.0EU970658.1 Zea mays clone 348580 protein YABBY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459367.11e-125protein YABBY 1
SwissprotQ7XIM71e-93YAB1_ORYSJ; Protein YABBY 1
TrEMBLC5X9N51e-123C5X9N5_SORBI; Uncharacterized protein
STRINGSb02g003390.11e-124(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Representative plantOGRP1408544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.19e-57YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ohmori Y,Abiko M,Horibata A,Hirano HY
    A transposon, Ping, is integrated into intron 4 of the DROOPING LEAF gene of rice, weakly reducing its expression and causing a mild drooping leaf phenotype.
    Plant Cell Physiol., 2008. 49(8): p. 1176-84
    [PMID:18593744]
  3. Ohmori Y,Toriba T,Nakamura H,Ichikawa H,Hirano HY
    Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice.
    Plant J., 2011. 65(1): p. 77-86
    [PMID:21175891]
  4. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  5. Tanaka W, et al.
    The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet.
    Plant Cell, 2012. 24(1): p. 80-95
    [PMID:22286138]
  6. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]