PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G040100.1.p

Common Name

Sb02g003436, SORBIDRAFT_02g003436

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 247aa MW: 27081.8 Da PI: 8.3868

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G040100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00052	55	87	4	36
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapsk 36 hn ErrR + ++ L +llP+++++ k Sobic.002G040100.1.p 55 WHNNKERRRLTKRVVWLRDLLQLLPSSPAEEEK 87 59************************6533333 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MADSSSLPAP PPSSSPRDDE ATARLLTLLL VVITIIGCAV ACVVAALCLR VKQTWHNNKE 60 RRRLTKRVVW LRDLLQLLPS SPAEEEKKGG ASTTTATTAQ AVRTVLARRI EATVSKVDRL 120 VASMSMSMSM STCCCLLGFA RSYEMARRLE RANKDVDEVY THLLPVVTQI DATHRVEQVL 180 VGVMQRQQQQ QQGGHTANKN NHSDAQRPAR ANESNEFDWQ PLLSEKNDDQ ASTVSGGAAF 240 EITVDR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.21586	0.0	leaf\| shoot

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G040100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002461487.1	0.0	uncharacterized protein LOC8081142 isoform X1
TrEMBL	C5XA74	0.0	C5XA74_SORBI; Uncharacterized protein
STRING	Sb02g003436.1	0.0	(Sorghum bicolor)

Link Out ? help Back to Top
Phytozome	Sobic.002G040100.1.p
Entrez Gene	8081142