PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G052800.2.p
Common NameSb02g004433, SORBIDRAFT_02g004433
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 644aa    MW: 73938.6 Da    PI: 5.7691
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G052800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.94.3e-152298190
                  FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                          +fYn ++ e+GF +r + +      +++++++ vCs+egk+e +++         a+ +t+Cka++++++++d+ w++++++ +HnH+l+
  Sobic.002G052800.2.p 22 DFYNLHSWELGFGIRCNMTVD----KSVVSQDIVCSCEGKPELSNT---------ASAQTDCKAMIRLHRSDDSCWYIQEFRGDHNHPLS 98
                          6**************997554....589************999755.........599******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-112298IPR004330FAR1 DNA binding domain
PfamPF105514.0E-27213306IPR018289MULE transposase domain
PROSITE profilePS509669.792496532IPR007527Zinc finger, SWIM-type
SMARTSM005750.0017507534IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MSIVVIRPSV GMSFDSRAEA YDFYNLHSWE LGFGIRCNMT VDKSVVSQDI VCSCEGKPEL  60
SNTASAQTDC KAMIRLHRSD DSCWYIQEFR GDHNHPLSGI CSENFCWPSH NHLKPYTKNL  120
VRRLRDDNVE LSKKCQSIYE YFWGMECKDI SLDLSDIDSD KTIELFDDFG SLRRDDPSFM  180
FCVELDDIDN QFNTVLWTNG RSRTQYAHFG DTVTFDTTYR TNLYGLPFIL FVGVNNHHQS  240
ILLGGALMRR KTVESFKWLF REFVILMGGK APSTILTDRC HEMEVAIQEE LPETIHRWCK  300
MHVLNNEHEF LGPICLKMSG FKDDFQKIID GMLTVREFEC AWQHLLDKYN LHDNAFLSQI  360
YDSRHKWANP YLKEKFCTKQ TSTQRNESAE NMFKGYVPLN RSINMFVRHY NKLQSDLNSK  420
ESSEENRSRK RPRFISKGLP IMEHAAKIYT RAMFEMFEGM ISQSGSYVVH EKEKGKAYLA  480
RNIRSDQQES WSQVEFEVII RAEDGAVVCE CGFWEHMGMP CCHAVKVMIH MGMQEIPAGN  540
IVKRWTMDAR DTVPVHLIGN DRAAENSKSY RTSELFIAGI KFVKSGSRSD QAFEGAMAVL  600
DQIKQELSEL GEDEDVSELS EQSSISAATT DDATSTLSGS ETD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G052800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459424.20.0protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A1W0W2D70.0A0A1W0W2D7_SORBI; Uncharacterized protein
STRINGSb02g004433.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-72FAR1-related sequence 5