PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G054600.5.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 213aa    MW: 23323 Da    PI: 8.7365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G054600.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.8e-0961105554
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Sobic.002G054600.5.p  61 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 105
                           99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.05E-1054110No hitNo description
SuperFamilySSF474593.27E-1554115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.7756105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1458116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-661105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-962111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MLCSPPFSSL LEFSRLLLLI LPGSTQMFQA QPKPGEGGMA PQPPAPRPKV RARRGQATDP  60
HSIAERLRRE RIAERMRALQ ELVPNTNKTD RAAMLDEILD YVKFLRLQVK VLSMSRLGGA  120
GAVAQLVADI PLSVKGEASD SGSTQHIWEK WSTDGTEKQV AKLMEEDIGA AMQFLQSKAL  180
CMMPISLAMA IYDTQHSQDG HSLMKPEPNT SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16570RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.6470.0callus| embryo| ovary| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G054600.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960750.0FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461549.11e-134transcription factor UNE12
SwissprotO227683e-75UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1W0W2H11e-154A0A1W0W2H1_SORBI; Uncharacterized protein
STRINGSb02g004570.11e-133(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]