PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G068100.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 846aa MW: 94674 Da PI: 4.9404

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G068100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.9	1.2e-10	157	204	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++++P + +k Ka++L + ++YI+sLq Sobic.002G068100.2.p 157 SHSLAERARREKISERMKVLQDIVPGC----NKVIGKASVLDEIINYIQSLQ 204 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.80E-8	151	208	No hit	No description
SuperFamily	SSF47459	2.36E-17	151	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.12	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-18	153	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-8	157	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-11	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF15612	0.0015	316	347	IPR028942	WHIM1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 846 aa Download sequence Send to blast
MDPASSVAAE LWRPPHLHHH HHLASSAGRH PHLEASSSSV VTAAAAAARS GGGGSSSSSR 60 RRARREAAAP PAEEEPSKLA STSGTAASSS AAGGRDSADP EAKRLKQMTP SENNDRRTEA 120 GSNSGNASKS ADKKPAPKEP PKDYIHVRAR RGQATDSHSL AERARREKIS ERMKVLQDIV 180 PGCNKVIGKA SVLDEIINYI QSLQRQVEFL SMKLETINAH MNNATVAFPT KDVFRPLLNI 240 TAEFTAEELE AALITPNEIL DDVHMPLLKS IPPVTRMAMG RGTWVTVLCR KLKDWWHWVA 300 EGDLPIIASH GTEIETYKTL EPAIRLVILK AICDIRVEQE DIRIFIDSSL KHGHDISTFR 360 KERIGGDSLG ISYWYEDDEI LGHRLYREIR RVEQVKKEPG KRSRGKGGSS AISVVSYQWE 420 TVASTFDEFD DVAEKLFSSR NRTEVSLGKK LKIEYLPEIE KIHKKKERLL KKQQREALLL 480 DSYLTSDGLT TGRSLRDRKP VTYTFDDYDR SINEAIKITK KREENSAEPV APTANRRALP 540 PRSEAPSNGK LNGPSPTAND SNDGNSSKSD DYQDSDGEQE NEALDRSNRR RKRSQRYTQD 600 FVEAVSDIDP NFDSDDDIMG EAVYDEEYLR SRKQNKASSA SEEDEEFRLE EDAEDDDEEE 660 YSLSSSEDLE EPQPQRHKKL ETRGRRGTKL RSVDEIETGL RRSKRSSRPR INYRQYDFSD 720 SDAEPGKAWK SDASDPDAGS DAENDMELST SSQEQEEEED DSRDEENGNN VNDKMEEDHA 780 VAENKVESEE EQKEQPQQQP VEKMDAPSRE SKSVGRTFLD LNELAPGGGF DDGPSLTVKD 840 DMDNI*

Sequence ? help Back to Top

Protein Sequence Length: 846 aa Download sequence Send to blast

MDPASSVAAE LWRPPHLHHH HHLASSAGRH PHLEASSSSV VTAAAAAARS GGGGSSSSSR  60
RRARREAAAP PAEEEPSKLA STSGTAASSS AAGGRDSADP EAKRLKQMTP SENNDRRTEA  120
GSNSGNASKS ADKKPAPKEP PKDYIHVRAR RGQATDSHSL AERARREKIS ERMKVLQDIV  180
PGCNKVIGKA SVLDEIINYI QSLQRQVEFL SMKLETINAH MNNATVAFPT KDVFRPLLNI  240
TAEFTAEELE AALITPNEIL DDVHMPLLKS IPPVTRMAMG RGTWVTVLCR KLKDWWHWVA  300
EGDLPIIASH GTEIETYKTL EPAIRLVILK AICDIRVEQE DIRIFIDSSL KHGHDISTFR  360
KERIGGDSLG ISYWYEDDEI LGHRLYREIR RVEQVKKEPG KRSRGKGGSS AISVVSYQWE  420
TVASTFDEFD DVAEKLFSSR NRTEVSLGKK LKIEYLPEIE KIHKKKERLL KKQQREALLL  480
DSYLTSDGLT TGRSLRDRKP VTYTFDDYDR SINEAIKITK KREENSAEPV APTANRRALP  540
PRSEAPSNGK LNGPSPTAND SNDGNSSKSD DYQDSDGEQE NEALDRSNRR RKRSQRYTQD  600
FVEAVSDIDP NFDSDDDIMG EAVYDEEYLR SRKQNKASSA SEEDEEFRLE EDAEDDDEEE  660
YSLSSSEDLE EPQPQRHKKL ETRGRRGTKL RSVDEIETGL RRSKRSSRPR INYRQYDFSD  720
SDAEPGKAWK SDASDPDAGS DAENDMELST SSQEQEEEED DSRDEENGNN VNDKMEEDHA  780
VAENKVESEE EQKEQPQQQP VEKMDAPSRE SKSVGRTFLD LNELAPGGGF DDGPSLTVKD  840
DMDNI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.17805	0.0	ovary\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription regulator. {ECO:0000305\|PubMed:23691993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G068100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002461627.2	0.0	DDT domain-containing protein DDR4
Swissprot	F4IDY7	0.0	DDR4_ARATH; DDT domain-containing protein DDR4
TrEMBL	A0A1W0W2P4	0.0	A0A1W0W2P4_SORBI; Uncharacterized protein
STRING	Sb02g005710.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	7e-45	BIG PETAL P

Link Out ? help Back to Top
Phytozome	Sobic.002G068100.2.p

Publications ? help Back to Top
Rudrabhatla P,Reddy MM,Rajasekharan R Genome-wide analysis and experimentation of plant serine/ threonine/tyrosine-specific protein kinases. Plant Mol. Biol., 2006. 60(2): p. 293-319 [PMID:16429265]