PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G076100.1.p
Common NameSb02g006350, SORBIDRAFT_02g006350
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 386aa    MW: 39958 Da    PI: 7.1707
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G076100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_175.57.2e-24262324163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+ L++eN+aL+ el++lkk ++ +++e+
  Sobic.002G076100.1.p 262 ERELKRERRKQSNRESARRSRLRKQQECEELARKVADLTTENSALRAELDNLKKACQDMEAEN 324
                           89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165961.3E-8130239No hitNo description
Gene3DG3DSA:1.20.5.1703.6E-17259321No hitNo description
PfamPF001703.0E-21262324IPR004827Basic-leucine zipper domain
SMARTSM003383.2E-22262326IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.185264327IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.56E-11265320No hitNo description
CDDcd147027.75E-22267318No hitNo description
PROSITE patternPS000360269284IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MASSSDEQPK PPEPPAAAAV VAAAAAAVPP QTHAEWAASL QAYYAAAGHH PYAWPAQHLM  60
AAAAAGAPFG TPVPFPVYHP GAAAAYYAHA SMAAGVPYPT SEAVPAVVPA APLPEGKGKG  120
KGGGASPEKG SSGAPSGEDA SRSGDSGSDE SSDTRDDDTD HKDSSAPKKR KSGNTSAEGE  180
PSQTAVVRYA AVESPYPTKG RSASKLPVSA PGRAALPSAT PNLNIGMDIW NASPALAVPA  240
VQGEANPGLA LARRDGVTQL DERELKRERR KQSNRESARR SRLRKQQECE ELARKVADLT  300
TENSALRAEL DNLKKACQDM EAENSRLLGG MAHSQGPSVT TTLGMSIDPP KVQHHDDEGQ  360
LHKKSSNNSN GNYAGVSHKP EANTR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278284RRSRLRK
2278285RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.107120.0ovary
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G076100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9702430.0EU970243.1 Zea mays clone 342575 DNA-binding protein EMBP-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459542.10.0DNA-binding protein EMBP-1 isoform X1
SwissprotP250324e-64EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLC5XDB00.0C5XDB0_SORBI; Uncharacterized protein
STRINGSb02g006350.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-22basic region/leucine zipper transcription factor 16