PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G076100.3.p
Common NameSb02g006350, SORBIDRAFT_02g006350
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 160aa    MW: 17576.5 Da    PI: 8.7646
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G076100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_177.71.4e-243698163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                          e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+ L++eN+aL+ el++lkk ++ +++e+
  Sobic.002G076100.3.p 36 ERELKRERRKQSNRESARRSRLRKQQECEELARKVADLTTENSALRAELDNLKKACQDMEAEN 98
                          89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.9E-183295No hitNo description
SMARTSM003383.2E-2236100IPR004827Basic-leucine zipper domain
PfamPF001705.9E-223698IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.18538101IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-123994No hitNo description
CDDcd147021.57E-184192No hitNo description
PROSITE patternPS0003604358IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MDIWNASPAL AVPAVQGEAN PGLALARRDG VTQLDERELK RERRKQSNRE SARRSRLRKQ  60
QECEELARKV ADLTTENSAL RAELDNLKKA CQDMEAENSR LLGGMAHSQG PSVTTTLGMS  120
IDPPKVQHHD DEGQLHKKSS NNSNGNYAGV SHKPEANTR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15258RRSRLRK
25259RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.107120.0ovary
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G076100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0562261e-166BT056226.1 Zea mays full-length cDNA clone ZM_BFb0090O10 mRNA, complete cds.
GenBankEU9702431e-166EU970243.1 Zea mays clone 342575 DNA-binding protein EMBP-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459542.11e-113DNA-binding protein EMBP-1 isoform X1
SwissprotP250321e-35EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A1W0W2S51e-113A0A1W0W2S5_SORBI; Uncharacterized protein
TrEMBLC5XDB01e-112C5XDB0_SORBI; Uncharacterized protein
STRINGSb02g006350.11e-113(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.12e-19basic region/leucine zipper transcription factor 16