PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G076600.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 678aa    MW: 73741.5 Da    PI: 6.6092
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G076600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12463509455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h   ErrRR+++N++f  Lr+l+P       +K++ a+iL  ++eY+k+L+
  Sobic.002G076600.1.p 463 SHVLKERRRREKLNERFVMLRSLVPFV-----TKMDRASILGDTIEYVKQLR 509
                           79999*********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.6E-4810171IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.672459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-18462532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-17463522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-14463513No hitNo description
PfamPF000102.5E-10463508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-16465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MAAAGGEAVQ KALQSVAQST GWTYSLLWRL CPRQGALVWA EGHYNGAIRT RKTTQQQQQQ  60
VVVVVPPPRR PTAALAPEDL TETEWFYLMC ASYCFPPAVG LPGEAFVRRV HVWLYGANKV  120
DSKVFSRAIL ARSAGIQTVA CIPVNDGVLE IGTTEKVEED IGLIQYARSI FMDQIGAHIM  180
PTLSGHSTST APTTHINHQP FQTKMGCIGD INVQKTSHNS GDEHHNEMED DGDVRIDLLQ  240
TNTGNDSSRH SPQDTNVGNE QGTLNAGSSE LMLTGTSERV RDGCSKQEDE EIPVLMVCQN  300
NGNLVAQDEF GPWHDFVDED LSSKYLQSSA AEDQAVLAEN AHYVETVLAI LRFNASRQTQ  360
AASSNTKAYL ALSKNSSFSR WTTSWNHKAS NNDLQSMLIP DDEGAPQRLL KSILLGAPSS  420
SSHPSYKGAD AAVHSSPEPR DDGEGTSRSR RAPPVQPAEL SASHVLKERR RREKLNERFV  480
MLRSLVPFVT KMDRASILGD TIEYVKQLRR RIQELESSRG RLVDSNPRTT AMAPPPPPPA  540
ASTETTRRGH HTSGGYLARA GTGTGTGTAA EASASGSCCN SSVGEHEHHL AGDTEVQVSI  600
IGSDALLELR CPHREGLLLR VMQALHQELR LEVTSVQASS AGDVLLAELR AKVKEVHGRR  660
SSITEVKRAI HLIVSSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-16715946219Transcription factor MYC3
4ywc_A1e-16715946219Transcription factor MYC3
4ywc_B1e-16715946219Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1467472ERRRRE
2468473RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G076600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU578992e-79U57899.1 Zea mays repressor-like protein (in1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310268.10.0basic helix-loop-helix protein A
TrEMBLA0A1W0W2U50.0A0A1W0W2U5_SORBI; Uncharacterized protein
STRINGSb02g006390.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Representative plantOGRP52261116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-59bHLH family protein