PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G080500.1.p
Common NameSb02g006700, SORBIDRAFT_02g006700
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 26860.1 Da    PI: 4.7775
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G080500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.41e-19956148
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                          k+ien+  rqv fskRr+g++KKA+E+S+LC+a v  ++fss gk + 
  Sobic.002G080500.1.p  9 KPIENENARQVCFSKRRQGLFKKASEISILCGAMVGSVVFSSFGKSFS 56
                          78****************************************998655 PP
2K-box13.72.7e-061011761381
                 K-box  13 kaeslqqelakLkkeienLqreqRhllGedLe........sLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                           ++ +lqq l+ Lkk++e Lq+  ++ +Ge +         +L l eLq  ++ Le ++  + + K++ ++ + +e+q
  Sobic.002G080500.1.p 101 EYLELQQSLDSLKKKNERLQEATKKEMGEHMMqwlnanilELGLDELQDFQKLLE-AIDGVVKEKENNIVVEARETQ 176
                           56689************************86422222222689999999987776.566555555555544444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.4E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-26174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.698161IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-19323IPR002100Transcription factor, MADS-box
PfamPF003199.7E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-193859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.504102197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MERRKIEIKP IENENARQVC FSKRRQGLFK KASEISILCG AMVGSVVFSS FGKSFSFGHP  60
SIDDVVNRFL NLVTPDGPAS SGANHDNSLA VTGTVQGLNM EYLELQQSLD SLKKKNERLQ  120
EATKKEMGEH MMQWLNANIL ELGLDELQDF QKLLEAIDGV VKEKENNIVV EARETQGSAT  180
QPHMEIASAS QSQFGEHISA NSMASAAPSS SNGFIDGFEV NDPLLGGGDL YDICAPGNFP  240
NNQNHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G080500.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459567.10.0agamous-like MADS-box protein AGL23
TrEMBLC5XDF20.0C5XDF2_SORBI; Uncharacterized protein
STRINGSb02g006700.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-19AGAMOUS-like 61