PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G080600.1.p
Common NameSb02g006710, SORBIDRAFT_02g006710
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 247aa    MW: 27115.4 Da    PI: 6.5152
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G080600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.68.9e-20955147
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                          k ien+  r+v fskRr+g++KKA+ELS+LC+a v  ++fs++g+ +
  Sobic.002G080600.1.p  9 KHIENEDARKVCFSKRRQGLFKKASELSILCGATVGSVVFSNSGRSF 55
                          68*****************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-29160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.26E-25172IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.165161IPR002100Transcription factor, MADS-box
CDDcd002652.63E-31371No hitNo description
PRINTSPR004042.7E-18323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MPRRKTEIKH IENEDARKVC FSKRRQGLFK KASELSILCG ATVGSVVFSN SGRSFSFGHP  60
SINDVADRFL NSVAPVDFAS GGASHDNSGA VMDTVHRLNM ELSELQQALD SENKKKERLK  120
EAIEKEKGQP MMQWLNANVL ELGLAELQEF QKCLEAVDIA VKEKTNQILA EARQTTQGSV  180
PQLPMEIPST SRYQFGQHIS ANSMAFTDPR SSNGFTDGFE VNDPLRSGGL QDVCGLGNFL  240
NNQNHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G080600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459568.20.0agamous-like MADS-box protein AGL29
TrEMBLA0A1B6Q9V70.0A0A1B6Q9V7_SORBI; Uncharacterized protein
STRINGSb02g006710.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-28AGAMOUS-like 61