PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G080700.1.p
Common NameSb02g006730, SORBIDRAFT_02g006730
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 242aa    MW: 26775.1 Da    PI: 4.1343
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G080700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.27.7e-17751145
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                          k+ien+ +rq+ f+kRr+ ++ KA+E+S+LC+a v  i+fs++g+
  Sobic.002G080700.1.p  7 KPIENEEQRQICFTKRRQSLFNKASEISILCGAMVGSIVFSTSGT 51
                          78****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-16158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.399159IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-13121IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-19372IPR002100Transcription factor, MADS-box
PfamPF003196.1E-20955IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-132136IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-133657IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVKGEVKPIE NEEQRQICFT KRRQSLFNKA SEISILCGAM VGSIVFSTSG TPFSFGHPSI  60
DDVAKRFLSS VISDGPSSSC ARNDYSWAVP DTIQLLNMEY SELQQALVSE KEKKKMLQEA  120
TKKEMDEPMM QLLNTNISEL SLEELQEFQK YLDAIHGVVE EKDTKMPETS QPQGLVPELP  180
MEIAPDQQYK FGDEHNSANP MAFTAPSSSD IEFIDGLFEV DGPCLSGDLA DVFGLGDFPD  240
N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G080700.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459570.11e-179agamous-like MADS-box protein AGL29
TrEMBLC5XDF61e-178C5XDF6_SORBI; Uncharacterized protein
STRINGSb02g006730.11e-178(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-22AGAMOUS-like 61