PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G096700.1.p
Common NameSb02g007960, SORBIDRAFT_02g007960
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 347aa    MW: 37235.3 Da    PI: 7.5674
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G096700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.23.3e-19121498128
                   NAM   8 hPtdeelvveyLkkkvegkklelee.......vikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgy 82 
                           +Ptd  lv+++L++ v++ ++++          ++ +d+y+++P++L +       + ++  wyf s+ ++k+++++rk ra++  +g 
  Sobic.002G096700.1.p  12 QPTDVTLVKDFLRPWVTSGDTKAGGagagaaaYVHAADLYSADPEELARafqpaVSRDGDAVWYFLSPLRTKSPRDRRKVRAVAdgTGC 100
                           7***************99995543345555536999***********844566444447779*******************76634677 PP

                   NAM  83 Wkatgkdkevlsk..kgelvglkktLvfykgrapk.gektdWvmheyrl 128
                           W++    k+v+++  +g++vg ++++ f + r+    +++ Wvm e++l
  Sobic.002G096700.1.p 101 WHSEAGPKNVIDHldGGRHVGYRQSFSFMRRRETGpDVRAGWVMAEFHL 149
                           ****999***999989999**********7655441469********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.0415169IPR003441NAC domain
SuperFamilySSF1019414.84E-2712169IPR003441NAC domain
PfamPF023653.4E-1212149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSTATAAALY AQPTDVTLVK DFLRPWVTSG DTKAGGAGAG AAAYVHAADL YSADPEELAR  60
AFQPAVSRDG DAVWYFLSPL RTKSPRDRRK VRAVADGTGC WHSEAGPKNV IDHLDGGRHV  120
GYRQSFSFMR RRETGPDVRA GWVMAEFHLH HENLGRKVEG LVLCKMYRSP RIHGPAVVPD  180
SDDIVHSDVS LYAETMFCCG KSKAVDDDDD SYSVPPRWQR RHAMNSDRTA TATAMTASLL  240
KKKVDGDDAV SGTTMAAVPC PNNKVVVADD EDLLVLPPAR KKMKVAVADA DSSGTALALK  300
ATAAGAPSMA AQLHCPQCGF HLAALQALVT LTKSKSIMPW SCPEEM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G096700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459645.10.0uncharacterized protein LOC8081834
TrEMBLC5X2R10.0C5X2R1_SORBI; Uncharacterized protein
STRINGSb02g007960.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1966278
Representative plantOGRP1956722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.22e-11NAC domain containing protein 16