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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sobic.002G104400.2.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family | WRKY | ||||||||
| Protein Properties | Length: 1582aa MW: 175455 Da PI: 6.988 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 46.9 | 5.4e-15 | 1436 | 1495 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
dD +W K+G K++ g f+rsYYrC + gC+++k ++ +++d +++ ++Y +eHnh
Sobic.002G104400.2.p 1436 DDDSKWEKFGEKNIFGYIFARSYYRCIWRnltGCSATKILQPDNNDANTLFVMYISEHNH 1495
8999**********************9887889*************************** PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF52058 | 2.92E-28 | 495 | 663 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 1.7E-26 | 496 | 665 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SMART | SM00367 | 110 | 519 | 539 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
| SMART | SM00367 | 28 | 567 | 594 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
| SMART | SM00367 | 520 | 615 | 639 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
| SuperFamily | SSF52540 | 2.21E-38 | 698 | 938 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 4.1E-5 | 703 | 834 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| PRINTS | PR00364 | 9.1E-11 | 718 | 733 | No hit | No description |
| Pfam | PF00931 | 3.7E-35 | 720 | 964 | IPR002182 | NB-ARC |
| PRINTS | PR00364 | 9.1E-11 | 788 | 802 | No hit | No description |
| PRINTS | PR00364 | 9.1E-11 | 885 | 899 | No hit | No description |
| SuperFamily | SSF52058 | 6.97E-30 | 989 | 1142 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 1.5E-11 | 995 | 1107 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 9.1E-11 | 1049 | 1065 | No hit | No description |
| SuperFamily | SSF52058 | 6.97E-30 | 1184 | 1380 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 5.2E-11 | 1186 | 1391 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SMART | SM00367 | 65 | 1299 | 1328 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
| Gene3D | G3DSA:2.20.25.80 | 6.7E-16 | 1424 | 1496 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 2.22E-16 | 1429 | 1497 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 17.35 | 1430 | 1498 | IPR003657 | WRKY domain |
| SMART | SM00774 | 6.2E-13 | 1435 | 1497 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 9.4E-14 | 1436 | 1495 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1582 aa Download sequence Send to blast |
MDATASESDP SSPRSRQLLP PIDATMASDP SPPPHRRQLR GPRPPRLDVR MESHKIKKPT 60 AVTPQPYKRS HLHLRWSRVK EIHCEPTDFK ALVQRHTGPV ATAPPDCTEM QYAGRSVVWS 120 PPVRPSRIAA VVVSASARLA ATVRAVGADS LVAADADSSL AAVLSLPRRP PGILSPAALP 180 PAACSGQFSA TPFDPSCLPW LKDKDKELSL QSPFFLPAGV EELQCLFTLN PRTRLLPAPG 240 MPPCPATVVS TAAGLSENNV LEIEIESGNG EGVPAGPVGD AERSPKAEPA GDLQVGACLA 300 SIKRLFQQLV HVRTIISSFS GKLPSDAWFN HVKHLTSDAE ESLEHLHYQM MLAKLGVGVG 360 THLEKVMPKV SGTRSKTTAI SFMHLLASQE LVILPVTDKL EGLRHGSPGL SGVVLGNYSD 420 MLSLSSSVIR CILLCRGILG IINMVNMEGK DKSLELPVFA FDDLTYAGLN KGIGMNAHSV 480 PARMTDPIYL LPMFTRSLLC LDLSSYSGLT QLPPSIGNLS NLAALNLSHC YSLQTLTVSI 540 GSLKNLQTLV LSCCHELRNL PVSLCELSKL RLLDLAGCSS LENLPASLVN LGNLENLNLS 600 YCKELKELPQ PFGNLQELKY LNLSGSHRVD LDVECLCTLA NLKSLTLSPL TNIQGFPDSF 660 KDLANRLDSL RWWKKNQIHP QCGPKAASLQ SYRCYEQSII DMLLSDEADN SSDQIVTSAC 720 IVGESGMGKT ELVHQIYNNR MIFDTFDLRI WLNMCDKKRL LGKIVELTTC ASCSDASISV 780 LEEIVIEELT SKRLLLVLDD SEIKSQYFWG YIRKLLNVCA KGSAVIVTTK SKEVANQIGA 840 MQTFYLSPLS KEECFMIFKE HVLEDLAMNN YCQLESIGWK FVEKCGGNPM CIKVLSGLLC 900 HSEIGLSEID MIVDGILPAL RLCYDLLPAH LQQCFKFCSL FPKDYIFVKH HIIRLWIAEG 960 FVFCEEDFKT AALSNEVRNL QSFLVVRRCL PVVRIFTLDD IFVKHRFLRA LNLSYTDILE 1020 LPISIGNMKH LRLLALNNTK IKSLPIEIGQ VNSLQTLELK DCCHLIDLPG STSSLAKLRH 1080 LDVQKEWGNV NVGMPHGIGY LTDLQTLTTF NIGNDLLHCS ISELKNLNGL SGHVHVTGLE 1140 NIKTANDARE ANMMGKHLLE ALTLEWSYQE EGMDDDMGKE IANEILQHLQ PNSNIMELVI 1200 QNYAGNLFPV WMQDNYLCKL ISVTLDNCHG CSELPYLGDL PSLKSLFIQR INGVERFGIE 1260 TSSLATEEKH PTGFPSLEVL NICEMYDLQF WVSMREGDFP RLFRLSISRC PKLTNLPRLI 1320 SLVHVSFYYG VELPTFSELP SLESLKIEGF QKIRSINFPH HLTTLKKLEI IDCKELLSVY 1380 AHSLSVSDLK VVRCLKLDLV GSSTEDHIGQ KVVNGRNSLT RRPMVLKTLT YTNVLDDDSK 1440 WEKFGEKNIF GYIFARSYYR CIWRNLTGCS ATKILQPDNN DANTLFVMYI SEHNHGFSNE 1500 PHLELQSQLG TGRKRKEYDV SSDENTSRKQ LHDSSVSAAS SVPRPATGEA TPSSAEELKA 1560 KKMGRPRKPN PRVFGPEWSI A* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 3e-26 | 711 | 1212 | 177 | 758 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 3e-26 | 711 | 1212 | 177 | 758 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 3e-26 | 711 | 1212 | 177 | 758 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 3e-26 | 711 | 1212 | 177 | 758 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 3e-26 | 711 | 1212 | 177 | 758 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 3e-26 | 711 | 1212 | 177 | 758 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 3e-26 | 711 | 1212 | 177 | 758 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 3e-26 | 711 | 1212 | 177 | 758 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 3e-26 | 711 | 1212 | 177 | 758 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 3e-26 | 711 | 1212 | 177 | 758 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 3e-26 | 711 | 1212 | 177 | 758 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 3e-26 | 711 | 1212 | 177 | 758 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 3e-26 | 711 | 1212 | 177 | 758 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Sobic.002G104400.2.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002459691.2 | 0.0 | uncharacterized protein LOC8057272 | ||||
| TrEMBL | A0A1W0W378 | 0.0 | A0A1W0W378_SORBI; Uncharacterized protein | ||||
| STRING | GRMZM2G382273_P01 | 0.0 | (Zea mays) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G45260.1 | 4e-12 | Disease resistance protein (TIR-NBS-LRR class) | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Sobic.002G104400.2.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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