PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G114200.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

BBR-BPC

Protein Properties

Length: 246aa MW: 26989.7 Da PI: 9.9626

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G114200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	25.4	3.8e-08	3	122	2	108
GAGA_bind 2 dddgsre.rnkgyyepaaslkenlglqlmssia.erdakirernlalsekkaav...aerdmaflqrdkalae.rnkalverdnkllal 84 dddgs rn+g+y+ k nlglq+mss++ +rd+k n a+ ++++ + ++ m+ ++ + +a ++ + ++k+l+ Sobic.002G114200.1.p 3 DDDGSLGtRNWGFYDTV---KGNLGLQVMSSVPpDRDTKSLLPNGAFLQHHGHHnapHQLHMQQ-HSQHSVAPlVLHHQRPPEQKVLHS 87 45566667****987...********99****777766665555442114444544.344455552334445556777777 PP GAGA_bind 85 llvensla...........salpvgvqvlsgtksi 108 ++ + + +p++++++s+++++ Sobic.002G114200.1.p 88 RPIGPAGHvghpghgghivHYHPTSYGMISDAQHT 122 76666555555666666666666666666665554 PP
2	GAGA_bind	243.2	1.8e-74	129	245	185	301
GAGA_bind 185 erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273 + + +kk++++v+ng++lD +++P+ vCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPLP++tkrrgaRi+grKmSqgafkk+LekLa Sobic.002G114200.1.p 129 SLERGSKKTVGMVINGIELDLANIPTLVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMNTKRRGARISGRKMSQGAFKKVLEKLA 217 557999********************************************************************************* PP GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301 +eGy+l+np+DLk++WAkH tnkfvtir Sobic.002G114200.1.p 218 GEGYNLANPIDLKTFWAKHRTNKFVTIR 245 *************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	8.5E-120	1	245	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	5.5E-13	3	128	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.4E-74	131	245	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MDDDDGSLGT RNWGFYDTVK GNLGLQVMSS VPPDRDTKSL LPNGAFLQHH GHHNAPHQLH 60 MQQHSQHSVA PLVLHHQRPP EQKVLHSRPI GPAGHVGHPG HGGHIVHYHP TSYGMISDAQ 120 HTLQMMQPSL ERGSKKTVGM VINGIELDLA NIPTLVCSCT GAPQQCYRWG AGGWQSACCT 180 TSISTYPLPM NTKRRGARIS GRKMSQGAFK KVLEKLAGEG YNLANPIDLK TFWAKHRTNK 240 FVTIR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G114200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054267	1e-139	BT054267.1 Zea mays full-length cDNA clone ZM_BFb0206F22 mRNA, complete cds.
GenBank	BT064015	1e-139	BT064015.1 Zea mays full-length cDNA clone ZM_BFc0131I22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008787890.1	1e-82	protein Barley B recombinant-like
TrEMBL	A0A1B6QAK9	0.0	A0A1B6QAK9_SORBI; Uncharacterized protein
STRING	Sb02g009770.1	1e-133	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2211	36	97
Representative plant	OGRP1865	12	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	2e-61	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	Sobic.002G114200.1.p