PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G115900.2.p
Common NameSb02g009860, SORBIDRAFT_02g009860
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 730aa    MW: 79751.4 Da    PI: 7.5846
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G115900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox542.9e-174093255
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
              Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55
                          ++  ++t+eq++eL +++++n++p++ +r+ L +k+gL+ +qV++WFqN+R ++
  Sobic.002G115900.2.p 40 KRQKRHTPEQIRELISAYQQNHHPDEPTRRALGEKIGLEAKQVQYWFQNQRSQM 93
                          556789*********************************************876 PP
2START99.94.5e-322164413204
                           HHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                 START   3 aeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                           ae+a++++v +a+++ep+W   +  e + +  + +k     +         +ea r++g+v + +a+l  +l d k +W e+++    +
  Sobic.002G115900.2.p 216 AEAAMDQFVMLATSGEPLWLPTPdgEALSYLGYQKKA----TlpmhhggLIMEATRETGIVRAFVADLIVKLTDAK-RWCEMFPdvvaS 299
                           789********************55222232232222....123455679**************************.*******77777 PP

                           EEEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...........-TTSEE-EESSEEEE CS
                 START  79 aetlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..........sssvvRaellpSgil 153
                           ++t  +i+ g   + +qlm+ael + sp    R   f+Ry ++  +g+w+++dvSvd    p+             +   ++llpSg+l
  Sobic.002G115900.2.p 300 VTTNGAITAGdfgSCIQLMNAELWVQSPRLHnRRINFLRYNKRVAEGQWAVMDVSVDGILGPSAgrrttdatavANNTTGCRLLPSGCL 388
                           7777777777*****************95555************************9655544333333333466778889******** PP

                           EEEECTCE..EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                 START 154 iepksngh..skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                           ie++++g   +k+twv h+++++ +++ l+r+l++sg a+ga +w+a lq+q 
  Sobic.002G115900.2.p 389 IEDMGKGNdyCKITWVVHAEYDETMVPTLFRPLLRSGKAFGAHRWLASLQSQY 441
                           ****999999****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-163290IPR009057Homeodomain-like
PROSITE profilePS5007114.1073696IPR001356Homeobox domain
SMARTSM003892.7E-1339100IPR001356Homeobox domain
SuperFamilySSF466892.09E-153993IPR009057Homeodomain-like
PfamPF000461.0E-144093IPR001356Homeobox domain
CDDcd000863.92E-144093No hitNo description
PROSITE profilePS5084827.274205446IPR002913START domain
SMARTSM002342.9E-7214443IPR002913START domain
SuperFamilySSF559615.89E-17214442No hitNo description
PfamPF018524.8E-25216440IPR002913START domain
SuperFamilySSF559611.56E-7519687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MEKEGQQQVN AYTDKDTDYT DGEGYNNEDY TQETETAASK RQKRHTPEQI RELISAYQQN  60
HHPDEPTRRA LGEKIGLEAK QVQYWFQNQR SQMQAKAMEH NSKAAQRQNA ALLAENASLR  120
QAMLKRSCFT CGGATVPAEL LAENHRLLME NARLRGDYMR ATELLNQIVL QHSAAPGPAV  180
QRPPAVVFRR PGAVVLPVDE GASKQADRDT RLRRHAEAAM DQFVMLATSG EPLWLPTPDG  240
EALSYLGYQK KATLPMHHGG LIMEATRETG IVRAFVADLI VKLTDAKRWC EMFPDVVASV  300
TTNGAITAGD FGSCIQLMNA ELWVQSPRLH NRRINFLRYN KRVAEGQWAV MDVSVDGILG  360
PSAGRRTTDA TAVANNTTGC RLLPSGCLIE DMGKGNDYCK ITWVVHAEYD ETMVPTLFRP  420
LLRSGKAFGA HRWLASLQSQ YEYLTILHSS QVPRGDKDNT AAISSMGKRG ILELAKRMMA  480
VFYSAVSGPV TQTSTSNLYE WPASAGTDAR RTDDAAVRMV TWKKPGSVAD LVLSASTTVW  540
LPNTPPQLVF QYLCDGQRRG EWDVFANGTA VAELCSVATG PLHGNAVSVL YSNVTTDGTD  600
SKKVLMLQQA CTDASRSMVV YAPVEEDFMR AVMNGGDHAS VFLMPSGFAV LPDGHGRVRD  660
APSSSSAPIG RDNHTAGSIL TMACQALLPG LSSSDKHAAD RAFDDVGNLL CHVLKKIKAA  720
VKANIVTPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G115900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023156326.10.0uncharacterized protein LOC100383907 isoform X2
TrEMBLA0A1W0W3G60.0A0A1W0W3G6_SORBI; Uncharacterized protein
STRINGSb02g009860.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.11e-130HD-ZIP family protein