PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G116600.1.p
Common NameSb02g009930, SORBIDRAFT_02g009930
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 104aa    MW: 10824.8 Da    PI: 8.2176
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G116600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-052547123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C+ C++ F++   L  H++ H
  Sobic.002G116600.1.p 25 YECSFCKRGFTNAQALGGHMNIH 47
                          99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.1E-62449IPR007087Zinc finger, C2H2
SuperFamilySSF576676.07E-72451No hitNo description
SMARTSM003550.0092547IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3232552IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-42549IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MEGGFNKSGS PEAEGSRRAP AGAYYECSFC KRGFTNAQAL GGHMNIHRKD RGSGGSKSTA  60
PPQQDDAGGG SRTYGGGDVH LGLSLGRKED VDLELRLGSY PYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G116600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9479761e-123EU947976.1 Zea mays clone 368057 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459756.15e-70zinc finger protein JAGGED-like
TrEMBLC5X4E31e-68C5X4E3_SORBI; Uncharacterized protein
STRINGSb02g009930.12e-69(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-16C2H2 family protein