PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G128400.1.p
Common NameSb02g011050, SORBIDRAFT_02g011050
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 217aa    MW: 23160.1 Da    PI: 5.1921
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G128400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.93.2e-261573259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                          +D y+WrKYGqKe+ g++fprsYY+C  + gCp+kk+v++++ dp+ +e+tY + H+++
  Sobic.002G128400.1.p 15 HDSYTWRKYGQKEILGARFPRSYYKCGRRpGCPAKKHVQQCDADPSKLEVTYLEAHTCD 73
                          7**************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-27675IPR003657WRKY domain
SuperFamilySSF1182908.37E-241375IPR003657WRKY domain
SMARTSM007743.9E-311474IPR003657WRKY domain
PfamPF031062.6E-241673IPR003657WRKY domain
PROSITE profilePS5081121.5971675IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDAASRMTVL QNGVHDSYTW RKYGQKEILG ARFPRSYYKC GRRPGCPAKK HVQQCDADPS  60
KLEVTYLEAH TCDDPPPSSS HAVPDPTAGS DALLVPPVPT VPFPSAQCYG GGRPSPPPLP  120
PYQVPYAATT LGSNVLTLTA TGVLLPSASY DPVPDVTDCT PSLEQEQDHD LLHIPSPACS  180
QSELLPMEAA KLSPHAHGLP LSLEHTLDCD FAVPEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-1616711875Disease resistance protein RRS1
5w3x_D7e-1616711875Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G128400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4285500.0DQ428550.1 Sorghum bicolor voucher BTx623 locus PRC1162 genomic sequence.
GenBankDQ4285510.0DQ428551.1 Sorghum bicolor voucher NSL50875 locus PRC1162 genomic sequence.
GenBankDQ4285520.0DQ428552.1 Sorghum bicolor voucher NSL51030 locus PRC1162 genomic sequence.
GenBankDQ4285610.0DQ428561.1 Sorghum bicolor voucher NSL92371 locus PRC1162 genomic sequence.
GenBankDQ4285620.0DQ428562.1 Sorghum bicolor voucher PI152702 locus PRC1162 genomic sequence.
GenBankDQ4285640.0DQ428564.1 Sorghum bicolor voucher PI267408 locus PRC1162 genomic sequence.
GenBankDQ4285660.0DQ428566.1 Sorghum bicolor voucher PI585454 locus PRC1162 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459807.11e-156WRKY transcription factor 6
TrEMBLC5X5811e-154C5X581_SORBI; Uncharacterized protein
STRINGSb02g011050.11e-155(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.18e-22WRKY DNA-binding protein 55