PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G135100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YB
Protein Properties Length: 175aa    MW: 19169.4 Da    PI: 4.7418
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G135100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB51.13.4e-1641138797
                 NF-YB   7 flPianvsrimkkvlPana.......kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                           +lP a v r++k  l   a        + kda     e +  fi ++++ a+d c++ kr+ti++dd+l al ++ f ++vepl++ l+
  Sobic.002G135100.1.p  41 ELPKAIVRRLVKDKLSHVAggegaevIVNKDAMAAFAESARIFIHYLSATANDMCKESKRQTISADDVLNALDEMEFSEFVEPLRTSLQ 129
                           68999999999988865331111221589************************************************************ PP

                 NF-YB  89 kyrelegek 97 
                           ++r+ +++k
  Sobic.002G135100.1.p 130 EFRNKNADK 138
                           ***998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-3340171IPR009072Histone-fold
PfamPF008081.5E-941112IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.0E-2742170IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MPRKATKAKE GEPQPADAAQ EEPVPAPAAP AAALTEAEVG ELPKAIVRRL VKDKLSHVAG  60
GEGAEVIVNK DAMAAFAESA RIFIHYLSAT ANDMCKESKR QTISADDVLN ALDEMEFSEF  120
VEPLRTSLQE FRNKNADKRS EANKKQKEKR RKLNEETPPE KENDPADDAK ENDE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.199670.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G135100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605590.0BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds.
GenBankEU9626970.0EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankEU9640460.0EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankKJ7283010.0KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310236.11e-122DNA polymerase epsilon subunit 3
TrEMBLC5X5Y51e-120C5X5Y5_SORBI; Uncharacterized protein
STRINGGRMZM2G012654_P011e-90(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Representative plantOGRP78621516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.19e-36nuclear factor Y, subunit B11