PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G139300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 130aa    MW: 14263.6 Da    PI: 8.8389
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G139300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20961156
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                          ++y+GVr+++ +g+++AeIrd s    +  r++lg+f+taeeAa+a+++ + +++g+
  Sobic.002G139300.1.p  9 TKYRGVRRRP-WGKYAAEIRDSSR---HgVRIWLGTFDTAEEAARAYDRSAYSMRGA 61
                          69********.**********432...25*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.90E-28970No hitNo description
PfamPF008472.5E-14960IPR001471AP2/ERF domain
PROSITE profilePS5103223.8151068IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-231069IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-311069IPR001471AP2/ERF domain
SMARTSM003801.1E-331074IPR001471AP2/ERF domain
PRINTSPR003674.8E-121122IPR001471AP2/ERF domain
PRINTSPR003674.8E-123450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MDDGGGEPTK YRGVRRRPWG KYAAEIRDSS RHGVRIWLGT FDTAEEAARA YDRSAYSMRG  60
ANAVLNFPED AAVYAAAFRG GSGGSSSSSR QQQHGGRDVI EFEYLDDEVL QEMLKSHEPS  120
SSSARNKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-3511091114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G139300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275191e-100KJ727519.1 Zea mays clone pUT5378 AP2-EREBP transcription factor (EREB189) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307832.12e-90ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC52e-35ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1B6QB794e-89A0A1B6QB79_SORBI; Uncharacterized protein
STRINGGRMZM2G060517_P013e-59(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.12e-36ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]