PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G162800.1.p

Common Name

Sb02g020760, SORBIDRAFT_02g020760

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 160aa MW: 17797.7 Da PI: 9.1949

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G162800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.5	3.2e-14	29	76	3	50
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 e++r rrk++NRe+ArrsR+RK++ ++ L+ v +L+ +Nk+L l+ Sobic.002G162800.1.p 29 ERRRKRRKESNRESARRSRLRKQQHLDDLTSQVNQLKDQNKQLSMALS 76 789****************************************96665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.3E-13	27	91	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.116	29	92	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-11	29	75	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.6E-11	31	99	No hit	No description
SuperFamily	SSF57959	1.0E-11	31	84	No hit	No description
PROSITE pattern	PS00036	0	34	49	IPR004827	Basic-leucine zipper domain
CDD	cd14702	4.85E-15	38	80	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MSSGTSSGSS QGTQSSRSED DLDLQAQMER RRKRRKESNR ESARRSRLRK QQHLDDLTSQ 60 VNQLKDQNKQ LSMALSITSQ NLVAVQAQNS VLQTQKMELD SRLGALTEIL WYINSSTSPS 120 TAPADPAMVN SFTTWSSASD ILGANAWNQQ QPIDLYQCF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	35	RRRKRRK
2	29	36	RRRKRRKE
3	31	36	RKRRKE
4	43	49	RRSRLRK
5	43	50	RRSRLRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.3592	0.0	callus\| ovary\| panicle\| root\| shoot

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G162800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067053	1e-148	BT067053.1 Zea mays full-length cDNA clone ZM_BFb0173J02 mRNA, complete cds.
GenBank	KJ727558	1e-148	KJ727558.1 Zea mays clone pUT5418 bZIP transcription factor (bZIP9) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002460009.1	1e-112	bZIP transcription factor 44
TrEMBL	C5X905	1e-110	C5X905_SORBI; Uncharacterized protein
STRING	Sb02g020760.1	1e-111	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3740	32	76
Representative plant	OGRP10708	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	2e-14	basic leucine-zipper 44

Link Out ? help Back to Top
Phytozome	Sobic.002G162800.1.p
Entrez Gene	8064675