PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G165080.1.p

Common Name

Sb03g018690, SORBIDRAFT_03g018690

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 257aa MW: 29177.8 Da PI: 6.8978

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G165080.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.1	1.2e-12	106	193	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkle....le 84 kfY+ YA+evGF ++ ++k +++ C++eg+++ kkk+e + r +++++t+C k+k+k+ + ++k e++ + l Sobic.002G165080.1.p 106 KFYSIYAEEVGFGLCYGNNKP-------YSYIIHCNNEGNNTYFKKKEELRVRDNTSKKTHCMSKMKLKRIYdENKEEIAVVIeyvdLM 187 6************998655.......58999**********999*****************997666555443333339 PP FAR1 85 HnHela 90 HnH+++ Sobic.002G165080.1.p 188 HNHPCF 193 ***976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-7	106	193	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MLSCLSRASW RAQTTELAVG QSHDGAPAAN SEAGTSCRAD RSEDVVAGIS ETKTSSRCRF 60 SQMATVTADE IATSDAEKKY THKEDIDPAL IPRPGMSFRN REEARKFYSI YAEEVGFGLC 120 YGNNKPYSYI IHCNNEGNNT YFKKKEELRV RDNTSKKTHC MSKMKLKRIY DENKEEIAVV 180 IEYVDLMHNH PCFKKKQETI NLSEHKEKDP VFLEFVDDLQ AADVPHHSIQ NIVRDMHGGG 240 EHVPITKRDL ENRQLM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G165080.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1W0W4I2	0.0	A0A1W0W4I2_SORBI; Uncharacterized protein
STRING	Sb03g018690.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43
Representative plant	OGRP30	12	351

Link Out ? help Back to Top
Phytozome	Sobic.002G165080.1.p
Entrez Gene	8074941