PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G165300.1.p
Common NameSb02g020870, SORBIDRAFT_02g020870
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 421aa    MW: 44997.9 Da    PI: 6.2023
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G165300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.4e-11371417447
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                           W   E+e l ++v+q+G+g+Wk I +  +    gRt+ ++k++w++ 
  Sobic.002G165300.1.p 371 WCLLEEETLRQGVEQYGSGNWKDILNNNPdvfIGRTPVDLKDKWRNM 417
                           55669****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-13362419IPR009057Homeodomain-like
PROSITE profilePS5129416.26363420IPR017930Myb domain
SuperFamilySSF466891.95E-14365419IPR009057Homeodomain-like
SMARTSM007173.7E-7367420IPR001005SANT/Myb domain
CDDcd116608.67E-19370419No hitNo description
PfamPF002493.5E-9370417IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MPRVTPVGAS LILEHVLADP SVPAAVVTKL LVALPFPSHP TPRLRRAVLL RRLAADPVSE  60
SSLDTLQLLA ALPAPASPIA AAHIAVAAYL AVSASDFDDA AGALFARPNG RARLAVDEGG  120
SPALASDEVM TTVDQFEAAV GNSFSQAVLR GLWGDRSATE ERVRELLAAE WAAIGPSLLV  180
QAAERIVGDG AVETWRAADE ATRAKLRILA GEERTHEILS KLEEPTSSAN PISTPAVEKV  240
INSLKTSCAE LHSVVEDPLP AAKAVADEVL AARTEKSVSL DAEEARGQPT TCGTAGPSAP  300
NDKGKGPSTG KPHSLMDWNP TARTFQWEES PGPESSEPSL RRPHLPSPRR APVSPLPPGE  360
NKNRRRRARK WCLLEEETLR QGVEQYGSGN WKDILNNNPD VFIGRTPVDL KDKWRNMINR  420
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.103670.0callus| embryo| ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G165300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462167.10.0uncharacterized protein LOC8064686
TrEMBLC5X9270.0C5X927_SORBI; Uncharacterized protein
STRINGSb02g020870.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Representative plantOGRP15031424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-12MYB_related family protein