PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G189000.1.p
Common NameSb02g023650, SORBIDRAFT_02g023650
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 318aa    MW: 34609.1 Da    PI: 4.3837
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G189000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-1899154256
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           r+++++t+eq++eLe  Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa+++
  Sobic.002G189000.1.p  99 RTKRRLTAEQVRELELSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWR 154
                           77889**************98**********************************9 PP
2HD-ZIP_I/II117.67.2e-38100191292
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            krrl++eqv+ LE sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR++tkqlE+d+++L++a+d l + +++L +++++Lr+
  Sobic.002G189000.1.p 100 TKRRLTAEQVRELELSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWRTKQLEQDFDRLRAAHDDLLAGRDALLADNDRLRS 188
                           69****************9999******************************************************************9 PP

           HD-ZIP_I/II  90 elk 92 
                           ++ 
  Sobic.002G189000.1.p 189 QVI 191
                           986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-1791158IPR009057Homeodomain-like
PROSITE profilePS5007118.13995156IPR001356Homeobox domain
SMARTSM003895.7E-1697160IPR001356Homeobox domain
CDDcd000863.41E-1599157No hitNo description
PfamPF000468.5E-1699154IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-19105155IPR009057Homeodomain-like
PRINTSPR000313.4E-6127136IPR000047Helix-turn-helix motif
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PRINTSPR000313.4E-6136152IPR000047Helix-turn-helix motif
PfamPF021836.1E-14156198IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDYARSMISS SAVPFRAAGD GDGGGQVFLF GGRGGGGFLR GLPLVGGASA AAGAAADGRR  60
KRAFQLTTAH EEPQLELGDD ELCGGFDYEL LHGPQQQERT KRRLTAEQVR ELELSFEEEK  120
RKLEPERKSE LARRLGIAPR QVAVWFQNRR ARWRTKQLEQ DFDRLRAAHD DLLAGRDALL  180
ADNDRLRSQV ITLTEKLQAK ESSASEPEEF TVATQETAYA LFEEDKLCLC SEIATGSTAA  240
AAPGSNDSPE SYFAGACSPP SSPEDDGCGG ADDRTFFLPD ALLATGVEES LERAAEEDDG  300
AGTQLNNWAW LWNDQQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036GGRGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.85680.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G189000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0700031e-122BT070003.1 Zea mays full-length cDNA clone ZM_BFb0367A14 mRNA, complete cds.
GenBankKJ7275771e-122KJ727577.1 Zea mays clone pUT5437 HB transcription factor (HB34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462311.10.0homeobox-leucine zipper protein HOX25
SwissprotA3BYC11e-69HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLC5XBF60.0C5XBF6_SORBI; Uncharacterized protein
STRINGSb02g023650.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-21homeobox 1