PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G192600.1.p
Common NameSb02g023960, SORBIDRAFT_02g023960
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 373aa    MW: 40817.6 Da    PI: 6.2619
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G192600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.32.6e-52201501129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhP+d+e+v+ yL +kv+++ ++  ++i+evd++k+ePwdLp+++k +ekewyfF ++d+ky++g r+nratk gyWkatg+d
  Sobic.002G192600.1.p  20 LPPGFRFHPSDNEIVSIYLMNKVHNRGFTS-TIIAEVDLNKTEPWDLPQEAKIGEKEWYFFYQKDRKYPSGLRANRATKGGYWKATGRD 107
                           79*************************999.89***************99999************************************ PP

                   NAM  90 kevlskkgel...vglkktLvfykgrapkgektdWvmheyrle 129
                           kev ++++ +   +g+kktLvfy+g+apkg kt+Wvmheyrle
  Sobic.002G192600.1.p 108 KEVDNTTQGVvllIGMKKTLVFYRGKAPKGDKTNWVMHEYRLE 150
                           ***99755446779***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-5811188IPR003441NAC domain
PROSITE profilePS5100557.1920188IPR003441NAC domain
PfamPF023653.3E-2721149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEEQQQQEMN TASIGGGLTL PPGFRFHPSD NEIVSIYLMN KVHNRGFTST IIAEVDLNKT  60
EPWDLPQEAK IGEKEWYFFY QKDRKYPSGL RANRATKGGY WKATGRDKEV DNTTQGVVLL  120
IGMKKTLVFY RGKAPKGDKT NWVMHEYRLE GSSRLPDPAS ASSSASNVLA MKASASKDEW  180
VVCRVFDKTT SIKKMTTPVY KVAMASAEIG QNQNNTPAIP IPMPLQQPLP VPMPMESPIL  240
RDFATCPVAP YFPNTGADMP PMMSSMEGID GTSSLQINDT LFGNSIATPP QMDLYHHMGM  300
GVAAVHMGIG VAGQMDMAAT GTDGFDLATP MPPSMASQKD EQANVAKMWS MMSVAGPGSV  360
NPSTERDDIW KY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-521819418174NAC domain-containing protein 19
3swm_B1e-521819418174NAC domain-containing protein 19
3swm_C1e-521819418174NAC domain-containing protein 19
3swm_D1e-521819418174NAC domain-containing protein 19
3swp_A1e-521819418174NAC domain-containing protein 19
3swp_B1e-521819418174NAC domain-containing protein 19
3swp_C1e-521819418174NAC domain-containing protein 19
3swp_D1e-521819418174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G192600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460177.20.0protein CUP-SHAPED COTYLEDON 1
TrEMBLA0A1W0W5300.0A0A1W0W530_SORBI; Uncharacterized protein
STRINGSb02g023960.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.26e-70NAC domain containing protein 38