PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G194400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 524aa    MW: 53228.6 Da    PI: 7.7304
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G194400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.4e-32327380255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Sobic.002G194400.1.p 327 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 380
                           9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.05E-15324381IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28325381IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-23327380IPR006447Myb domain, plants
PfamPF002491.0E-6328379IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MKRGGGGTTG WEQPQACDQE RGASVAAEGR RRAMEAASPD LSLHISLPSS ASGPGPSGGG  60
RAAVGGAGGG GGGGAGGGDP WRRLNGSTAS TELSLSPPAE QEHADALPWR HRPSAAAAAA  120
VSSSAATTSV GGAALMMPAA MPMPMLQPLD GGGGLAGSGG GGASVAPPIR GIPIYSGPGG  180
FPFLPPATGA DGGPLHHHHQ QQQQQKLGFY GSYHPSTWPS SLGSTSPSPS PLAPGTPPPS  240
TLDPASAFLS SPAAHHHHHR MLSASGRLNG MLTDTLRGYG GSGVVGGLGG IVGGHHHHHH  300
HLHGAQPFGL GSRFMPKLPA KRSMRAPRMR WTSTLHARFV HAVELLGGHE RATPKSVLEL  360
MDVKDLTLAH VKSHLQMYRT VKSTDKPAAS SGGNDGGSGD EDFPGAGQAA SGGENNMCVR  420
TFGEHHQRST SEGAASSVGG GGGDMDQSSA GNTSTRWSNS SRDPWLSSNS CNMDAHRLAG  480
LSSPIENAEP CRSSSSQVSN HELSSPSLEF TLGRPDWQGT DHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-16328382357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16328382357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16328382357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16328382357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G194400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9546670.0EU954667.1 Zea mays clone 1476543 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308039.10.0probable transcription factor RL9
SwissprotQ0J2351e-162ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A1B6QCF30.0A0A1B6QCF3_SORBI; Uncharacterized protein
STRINGGRMZM2G082264_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25583787
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.14e-55G2-like family protein