PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G201100.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

ZF-HD

Protein Properties

Length: 111aa MW: 12461.1 Da PI: 8.4964

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G201100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	97.2	1.2e-30	40	97	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++v+Y+eC++NhAas+Gg+a+DGC+Ef+++ gee+t+ alkCaACgCHR+FHRr +++e Sobic.002G201100.2.p 40 CSVHYRECRRNHAASTGGYAIDGCREFIAE-GEESTSGALKCAACGCHRSFHRRVQVYE 97 789************************8.999******************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	8.0E-24	22	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.9E-29	42	94	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.5E-23	43	92	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.204	44	93	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MQRGSSCAES KAWLERGRKL TMKRLLIMRR CEPIVRFTCC SVHYRECRRN HAASTGGYAI 60 DGCREFIAEG EESTSGALKC AACGCHRSFH RRVQVYEVAW DYGSDTSSTE *

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G201100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU974156	1e-107	EU974156.1 Zea mays clone 441364 mini zinc finger 3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021309213.1	3e-76	mini zinc finger protein 2-like
Swissprot	Q6ER22	2e-30	MIF3_ORYSJ; Mini zinc finger protein 2
TrEMBL	A0A1B6QCK4	8e-75	A0A1B6QCK4_SORBI; Uncharacterized protein
STRING	Si031576m	2e-57	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	2e-24	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	Sobic.002G201100.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]