PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G209800.1.p
Common NameSb02g025380, SORBIDRAFT_02g025380
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 159aa    MW: 16716.8 Da    PI: 8.7143
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G209800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000432446123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          + C +C++ F ++  L  H++ H
  Sobic.002G209800.1.p 24 FICMYCDRKFFSSQALGGHQNAH 46
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.9E-81469No hitNo description
PROSITE profilePS5015710.6162451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEQELNLELT LFHPSVSPEP PGYFICMYCD RKFFSSQALG GHQNAHKYER SLAKRRREIA  60
AALRAHGAAA TATGARDAAA MGLGSRDVPA RPQGTGTGVV VVVDEDKSAT RMDKEKAAAA  120
AAAAAAAPAP APPSNKRRSP DSGYGVERAE ELDLSLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G209800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9679741e-116EU967974.1 Zea mays clone 312184 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462423.11e-111uncharacterized protein LOC8056008
TrEMBLC5XDJ71e-110C5XDJ7_SORBI; Uncharacterized protein
STRINGSb02g025380.11e-111(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-15zinc finger protein 2