PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G209900.1.p
Common NameSb02g025390, SORBIDRAFT_02g025390
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 183aa    MW: 19204.3 Da    PI: 5.6768
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G209900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-0581103123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C+k F ++  L  H++ H
  Sobic.002G209900.1.p  81 FSCTYCDKKFYSSQALGGHQNAH 103
                           89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-672117No hitNo description
PROSITE profilePS5015711.38581108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MVQHSTLTVI QTEANSSYSS IRSSPSFGEP AALPAVLSPA AMDPKGESAR GGGGQGEGDL  60
DLNLSLQPTL LAPEPEPLGY FSCTYCDKKF YSSQALGGHQ NAHKFERSVA KRARELAAAR  120
RAGEGGERAS AAEEEPRMGK EMGIARSVSA PSSSSSHQIR ASPEASRNNL TDDIDIDLSL  180
KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G209900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462424.11e-130zinc finger protein 2
TrEMBLC5XDJ81e-129C5XDJ8_SORBI; Uncharacterized protein
STRINGSb02g025390.11e-130(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-12zinc finger protein 2