PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G222300.1.p
Common NameSb02g026310, SORBIDRAFT_02g026310
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GeBP
Protein Properties Length: 443aa    MW: 47476.8 Da    PI: 9.7343
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G222300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57391.87.7e-29192290298
                DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 
                           +++rlws  Deiv+L+Gl +++ak+g+   ++ di++++  +++++s+kv+ +ql++K+rrLK+K++  +++ k+g++p++ ++h+q++
  Sobic.002G222300.1.p 192 RPSRLWSLRDEIVILRGLATYRAKRGVlpGSMYDISKLHGHIQSELSVKVTPTQLSDKVRRLKQKYNLLSSRGKNGRDPDLPTQHEQSV 280
                           679************************666677******************************************************** PP

                DUF573  89 felskkiWgs 98 
                           +e+ kk+Wg+
  Sobic.002G222300.1.p 281 YEIGKKVWGT 290
                           ********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.7E-27194289IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAPKRPAAVA ASGSASEASD AEADAAHHQP SSPSPSKTPP PNPNPKSAAA GPTSAAEDST  60
AAGSDSEAAY DSDADHRPAP RKAAAAAASS PSRKPRSPRP RSRSRSPDAA SYSDVAASDA  120
DPTAGDSADD DNASPLALRP PRPSRAEAAA IKPLSSRPMD PPRRSMVPSF SEPRPKRPRS  180
AAVPSSVEQL KRPSRLWSLR DEIVILRGLA TYRAKRGVLP GSMYDISKLH GHIQSELSVK  240
VTPTQLSDKV RRLKQKYNLL SSRGKNGRDP DLPTQHEQSV YEIGKKVWGT TANGGGSTGG  300
DGYEIGGGGD DSEEDHEIAE SDDDVESGRD ERPRKNRRVM PIAMANGNGA GFGAMNANSR  360
GKFDIEKGKD AYPYLWETVE DLSKEHPNGV AFKKAFELIE GPKARGMEEK LRKFRLTEIR  420
HQLRRMELMK ETVKMVLDAL EG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.197850.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G222300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0432610.0BT043261.1 Zea mays full-length cDNA clone ZM_BFc0135N12 mRNA, complete cds.
GenBankEU9700880.0EU970088.1 Zea mays clone 339529 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460312.10.0STOREKEEPER protein
TrEMBLC5X2780.0C5X278_SORBI; Uncharacterized protein
STRINGSb02g026310.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Representative plantOGRP1071349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-13DNA-binding storekeeper protein-related transcriptional regulator