PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G224300.1.p
Common NameSb02g026510, SORBIDRAFT_02g026510
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 507aa    MW: 55149.6 Da    PI: 8.2458
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G224300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.97.2e-31181492127
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratk..sgyWkat 86 
                           p GfrF+P+deelv +yL ++++++++  ++ i+e d+y ++P +L  +++k+ +++ewyf s+r++ y +g r+ r+t+  +g+Wka+
  Sobic.002G224300.1.p  18 PIGFRFKPKDEELVEYYLVNRLTRQPTVPNDYITEYDVYLCHPDTLTkAEHKGvDQEEWYFLSPRSRMYGNGVRPARKTRdgRGRWKAS 106
                           89************************888799**************84333333777********************99955677**** PP

                   NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                             +kev +k   +  + ++ +L +++g  +k ++t+W+m e +
  Sobic.002G224300.1.p 107 TASKEVDQKvvCNGITFCRSVLNYFEGVPKKEVRTKWIMLELK 149
                           ****999988877789***********************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-3513177IPR003441NAC domain
PROSITE profilePS5100537.00717177IPR003441NAC domain
PfamPF023656.2E-1618148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MSWSAVGMAG DADEDEYPIG FRFKPKDEEL VEYYLVNRLT RQPTVPNDYI TEYDVYLCHP  60
DTLTKAEHKG VDQEEWYFLS PRSRMYGNGV RPARKTRDGR GRWKASTASK EVDQKVVCNG  120
ITFCRSVLNY FEGVPKKEVR TKWIMLELKV PCFEIKLDKP GPKNMLDEYV VCKIYVSPQH  180
KKKADAYEEG TSSACDGDEQ AFSPTQHGQG TAGSMFSEKQ AGKRPMLEKV RPGSLGIASS  240
TQASSTQYFS APGGQGQPTG AAHSSQAPQM PPPQRQAGAF QSQSLLVQQQ PTQQTPVQYQ  300
SFPDARVDHH PFGQTTATMT TRRPPALENL GVPGNPPRRD PGTAFRPLVS LQCHYDQNYR  360
GVKPPANASS SQPQMLAATS FLPPPQLPFF NGDANRRGAA TAAAGVAPYG SYPYQSRSLT  420
LEGAGQDGAS NGTNGAPRFN VNINDEQFFV DLAMTTSNTS LMTGARTQTA PAPARLVQSQ  480
PPPPAGAAQL ETETGEASGL NKKDAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-1961751166Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G224300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460324.20.0protein ATAF2
TrEMBLC5X2A10.0C5X2A1_SORBI; Uncharacterized protein
STRINGSb02g026510.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Representative plantOGRP1463834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.13e-24NAC-like, activated by AP3/PI