PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G224500.1.p
Common NameSb02g026530, SORBIDRAFT_02g026530
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 262aa    MW: 28041.6 Da    PI: 6.8008
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G224500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08181221954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r RR+ri +++ +L++l+P       +K++ a++L +A++Y+k L
  Sobic.002G224500.1.p 181 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAIHYVKFL 221
                           699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.675172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-14173241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14176233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-6182221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-6194226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEFDLLNYSP EAQLELMNTM LQLEQLTALD AHQSSPMAPV SPPISPVQTH AGHHNSFSPP  60
PPHMSTITTT TAGYPAEQYH TPPAAALYAA ATGGSLDHLQ DCYVLSSSPG PDNNNNNNGG  120
AAAAAALQQA MGSSSPTSAD AMREAIFHIA ALQPVEIDPE AVRPPKRRNV RISKDPQSVA  180
ARLRRERISE RIRTLQRLVP GGTKMDTASM LDEAIHYVKF LKSQVQSLER AAAATHRAAA  240
LGAAYPAFHA PWQYALPHGD M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167RPPKRR
2181186RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G224500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9561561e-172EU956156.1 Zea mays clone 1558251 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460327.10.0transcription factor bHLH87
TrEMBLC5X2A40.0C5X2A4_SORBI; Uncharacterized protein
STRINGSb02g026530.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.12e-41bHLH family protein