PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G230000.1.p
Common NameSb02g026920, SORBIDRAFT_02g026920
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 226aa    MW: 23831.8 Da    PI: 8.4056
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G230000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.5e-133278354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          r+h+e+Er+RR+riN  +++Lr+llP a      +++Ka+ L ++v+++++L
  Sobic.002G230000.1.p 32 RSHSEAERKRRQRINAHLATLRTLLPAA-----SRMDKAALLGEVVRHVREL 78
                          78*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4472978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-133285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-123279No hitNo description
PfamPF000108.2E-113278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-143281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-123584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2606.6E-5132196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVPVGSDEAA EVAVDGECSP PAATTTRSGT SRSHSEAERK RRQRINAHLA TLRTLLPAAS  60
RMDKAALLGE VVRHVRELRG EADAAAAGVA VAVPGEGDEV GVEEGQQHCF CHGGERERAA  120
AAANTRRVRA WVCCADRPGL MSELGRAVRS VSARAVRAEI ATVGGRTRSV LELDVVGGHH  180
DGEGTSTSSR PALQAALRAV LLSREEMLGA ECYKRQRFSA HLARV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13742ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G230000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9691020.0EU969102.1 Zea mays clone 326075 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460360.11e-157transcription factor bHLH30
TrEMBLC5X2Y61e-155C5X2Y6_SORBI; Uncharacterized protein
STRINGSb02g026920.11e-156(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.16e-17bHLH family protein