PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G235500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 187aa    MW: 20793.2 Da    PI: 9.3176
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G235500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.35.9e-1287140356
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                           + +r rr+ +NRe+ArrsR RK+ ++ eL   v  L + N++L +el++    +
  Sobic.002G235500.1.p  87 AERRRRRMVSNRESARRSRMRKQRQLTELWAQVVHLRGANRRLLDELNRAMRGC 140
                           568999*****************************************9987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-885136No hitNo description
SMARTSM003381.1E-1285149IPR004827Basic-leucine zipper domain
PfamPF001702.2E-987138IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.81887138IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.26E-1089137No hitNo description
PROSITE patternPS00036092107IPR004827Basic-leucine zipper domain
CDDcd147029.32E-1496138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MLQQHHYHGG VASLHCLSNP DQAFHAHYHS NMIAMPPTPL FHHLSPSTFE QPIHEAQAVV  60
AAGNSPAGSG STDDAYGGGG RTAMAEAERR RRRMVSNRES ARRSRMRKQR QLTELWAQVV  120
HLRGANRRLL DELNRAMRGC SDVCCENARL EKEKTDLSTK LERLTQAQNT ATPSSSSEPQ  180
HDTARY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101108RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G235500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277091e-157KJ727709.1 Zea mays clone pUT5648 bZIP transcription factor (bZIP82) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308628.11e-137basic leucine zipper 43
TrEMBLC5X3281e-136C5X328_SORBI; Uncharacterized protein
STRINGSb02g027410.11e-111(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Representative plantOGRP1312045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04038.11e-11basic leucine-zipper 48