PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G235700.1.p
Common NameSb02g027430, SORBIDRAFT_02g027430
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 438aa    MW: 45827.1 Da    PI: 6.251
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G235700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09265313355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Sobic.002G235700.1.p 265 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 313
                           58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-17260330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-11260317No hitNo description
PROSITE profilePS5088815.65262312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16263329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-7265313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDMNESGEKG MEGNASSGAA GIPVEWQTQF SAAAFSCAPP QQQQVPMMDS AFASAAGLWA  60
STSQAMALSD VGAMSAARGG GGFLAPVPGF LPQGLGHFPV DSGFIERAAR ASCFGGGGGV  120
MGATAGYGTA DHQTMNNAFS GSSEALLDHQ RKDGNDKGEP ELGRNGHDGV LSSEAAAGDC  180
SSKGTSDSKK RRRPNEVMGG DQVQSANLPA DSANESVHSK DKGEESSPAT TTGPGKSKGK  240
GAKETSESQK EDYIHVRARR GQATNSHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAV  300
MLDEIINYVQ SLQRQVEFLS MKLATVNPRL DLNIEGLLSK DLLRFPGVPS SSLGFSPEMM  360
HPQLQLSQPG LIQGGAAGMA NPDVFRRIMQ AQLSAKDGSQ MSHALNGGSF SEVAQMAYPS  420
LGSQDLSIRP SQDGFQM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G235700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7267900.0KJ726790.1 Zea mays clone pUT2275 bHLH transcription factor (bHLH86) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308861.10.0transcription factor bHLH49 isoform X1
TrEMBLA0A1B6QD470.0A0A1B6QD47_SORBI; Uncharacterized protein
STRINGSb02g027430.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-63bHLH family protein