PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G236200.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 437aa    MW: 46804 Da    PI: 7.121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G236200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.78.9e-18167216255
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Sobic.002G236200.2.p 167 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 216
                           889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.6E-24162236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-19163233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.844165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.48E-17167220No hitNo description
PfamPF000103.3E-15167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MGIQGNKAGT HEHDFLSLYA AAAAAKDAPL LLHHDSKAPP PPASQGNFLL KTHDFLQPLD  60
QKPGAPPEPS PLPASAAAES RHRQQQQQQV VHALPLPGGV GTFSISPAPV SVALPAPAVV  120
KSEPPFVLWG QPAATLQPGA RDLTVRVDRK GGSCSDGGTD QRPNTPRSKH SATEQRRRSK  180
INDRFQILRE LLPHNDQKRD KATFLLEVIE YIRFLQEKVQ KYEATFPEWN QENAKMLPWS  240
KGQIPGDSPP DPSHFMRNGS SPGSNFTGKI DDNHNIVTSA AASGAQDQAE TDHMASGCYR  300
SAETPANITN NAISQSQPQW TGPSPVDDSA VNSEMLNNQQ LAIDEGTISV SSNYSQELLN  360
SLTHALQSSG VDLSQASISV QINLGKRAVK RPVAPSNSKE PADPASSNEL GHQLMMLGAG  420
ADNLSHTTKR HKPGNS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G236200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0676940.0BT067694.1 Zea mays full-length cDNA clone ZM_BFc0130K07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308860.10.0transcription factor BIM2 isoform X4
TrEMBLA0A1B6QD590.0A0A1B6QD59_SORBI; Uncharacterized protein
STRINGSb02g027460.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-59BES1-interacting Myc-like protein 2