PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G236600.2.p

Common Name

Dof7, Sb02g027480, SORBIDRAFT_02g027480

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 253aa MW: 25792.8 Da PI: 9.4633

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G236600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116	1.5e-36	45	101	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC +++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss Sobic.002G236600.2.p 45 DPCPRCGARDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGTRKSSSSS 101 57**************************************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-23	44	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.323	45	99	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.3E-31	46	99	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	47	83	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MQEHGRRPVT PFAGVDLRRP KGYPAPAAVA AAKEAAPARA PVVGDPCPRC GARDTKFCYY 60 NNYNTSQPRH FCKSCRRYWT KGGSLRNVPV GGGTRKSSSS STSSPSATTS ASPGGAAPKN 120 TKRSKNSKRR RVAPAPDPAA PGTDAPTVTA TATADVANTA PSTEAAAATV AASEKPVTMT 180 EEEPAAAVVV ATETKPPAAP GLGLADAGSG GGGKELLPDP SHFEWPSGCD LGSYWGTSVF 240 ADTDPALFLN LP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	131	KRRRV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.9318	6e-51	root\| shoot

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00672	SELEX	Transfer from GRMZM2G009406	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G236600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582404	0.0	KC582404.1 Sorghum bicolor dof7 protein (dof7) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002460395.2	1e-179	dof zinc finger protein MNB1A
TrEMBL	C5X346	1e-179	C5X346_SORBI; Dof-type zinc finger protein 7
STRING	Sb02g027480.1	1e-180	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	6e-27	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Sobic.002G236600.2.p
Entrez Gene	8063745

Publications ? help Back to Top
Kushwaha H,Gupta S,Singh VK,Rastogi S,Yadav D Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis. Mol. Biol. Rep., 2011. 38(8): p. 5037-53 [PMID:21161392]