PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G242500.2.p
Common NameSb02g027950, SORBIDRAFT_02g027950
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 584aa    MW: 62307 Da    PI: 6.7022
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G242500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-33385443159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Sobic.002G242500.2.p 385 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 443
                           59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-37370445IPR003657WRKY domain
SuperFamilySSF1182905.75E-29377445IPR003657WRKY domain
PROSITE profilePS5081137.539380445IPR003657WRKY domain
SMARTSM007744.0E-38385444IPR003657WRKY domain
PfamPF031062.2E-25386443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MAGASNHGSL MDEWLPPPTP SPRTLMSSFL NEEFSSEPFS GFFSEHGTNK PHDQSEKSRE  60
VVNSSEEVPA HAVNDPFQKG FSLKPNLFSA NHKSNSNGGL AERRAARAGF SVAKIDTSRV  120
GSSAVIRSPV SIPPGLSPTT LLESPVFLYN KMAQPSPTTG TLPFLMATND KSTIPPAAKI  180
TEDSPFDNDV FSFQPHLGSE ATGFSTAEKD YGAYQQKQSL SNIHQQESSL QSSFTAVKDN  240
TSATIVKAKT SSSMFSDSHY SADQQQADET NIKVQGKGVE ARSAAFLPVS AHSDASLLES  300
QDAVDVSSTL SNEEERATHG TVSIECDGDE DETESKRRKL ELDALGATAI TTTSTTSTID  360
MGPGASRAVR EPRVVVQTTS EVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTHPGCSVRK  420
HVERASHDLK SVITTYEGKH NHEVPAARNS GQGSSGSGSA PSAPQAGGSH RRQESAQASF  480
AHFGTTSPFG SFGLPPSRQL GPTTGNFRFG MVPPGMTIPM PSLGSLAPTK MVGSSSSMQG  540
YPGLMMPGEP KVEPVSQPLF PMANASPPAY QQMLSRPPFG HQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-38376446878Probable WRKY transcription factor 4
2lex_A5e-38376446878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.122070.0ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G242500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9571970.0EU957197.1 Zea mays clone 1585477 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462550.20.0probable WRKY transcription factor 2
RefseqXP_021310344.10.0probable WRKY transcription factor 2
TrEMBLA0A1B6QD730.0A0A1B6QD73_SORBI; Uncharacterized protein
STRINGSb02g027950.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.17e-59WRKY DNA-binding protein 2