PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G247300.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 428aa    MW: 47788.4 Da    PI: 9.1313
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G247300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.12.9e-11119162141
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                           e++ k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e
  Sobic.002G247300.2.p 119 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 162
                           6778999************************9633355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-8115167No hitNo description
SMARTSM003382.6E-7119210IPR004827Basic-leucine zipper domain
PfamPF001702.7E-8120162IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.082121163IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-7124165No hitNo description
PROSITE patternPS000360126141IPR004827Basic-leucine zipper domain
PfamPF141442.4E-28219293IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MTIWGNWTRR CSCTWITAAA MSMAARSKSI KGGEISLVLS PAPVGSKQPA RSPDHHHHQH  60
QQAAMEELAG SRRQQQEHHH LQHQPFAAAA AEPAAPVGMI KDVKPLAKKD HRRGTSTSER  120
DPKTLRRLAQ NREAARKSRL RKKAYIQQLE SSRIRLAQLE QELHTARAQG VFFPNSGILA  180
DQGVAGKGVP IGGIDGLSSE AAMFDVEYGR WQEEHYRLMY ELRAALQQHL PEGELQMYVE  240
SCLAHHDEMV GIKEGAIKGD VFHLISGVWR SPAERCFLWL GGFRPSEVIK MLLSHVEPLT  300
EQQIVGVYGL QQSALETEEA LSQGLEALYQ SLSDTVVSDA LSCPSNVANY MGQMAAAMNK  360
LSTLEGFVRQ AENLRQQTLH RLHQILTTRQ MARSLLAMSD YFHRLRTLSS LWVTRPRAPQ  420
EQQQGHS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.146831e-124callus| embryo| panicle
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G247300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669280.0EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308081.10.0transcription factor TGA2-like isoform X2
SwissprotQ52MZ21e-150TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A1B6QDA50.0A0A1B6QDA5_SORBI; Uncharacterized protein
STRINGSb02g028380.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-138bZIP family protein