PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G247500.4.p
Common NameSb02g028390, SORBIDRAFT_02g028390
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family EIL
Protein Properties Length: 610aa    MW: 68172.7 Da    PI: 6.1838
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G247500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3422.64.2e-129384141351
                           XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasd 89 
                           e+l +rmwkd+++l+r+ker+++l   ++a++++ + + +++qa rkkmsra DgiLkYMlk m+vcna+GfvYgiip+kgkpv+gasd
  Sobic.002G247500.4.p  38 EDLARRMWKDRVRLRRIKERQQKLA-LQQAELEKLRPKPISDQAMRKKMSRAHDGILKYMLKLMQVCNARGFVYGIIPDKGKPVSGASD 125
                           89*******************9865.66667********************************************************** PP

                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S-- CS
                  EIN3  90 sLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGke 178
                           ++raWWkekv+fd+ngpaai ky+++nl+ ++++s    +s+++hsl++lqD+tlgSLLs+lmqhcdppqr++plekgv+pPWWP+Gke
  Sobic.002G247500.4.p 126 NIRAWWKEKVKFDKNGPAAIEKYDSENLVTANAQSG---GSKNPHSLMDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGKE 211
                           ******************************988888...9************************************************* PP

                           HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX.XX. CS
                  EIN3 179 lwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah.ss. 265
                           +ww +lgl+  q  ppykkphdlkk+wk +vLt vikhmsp++++ir+++r+sk+lqdkm+akes ++l vl++ee++++++    s+ 
  Sobic.002G247500.4.p 212 EWWIALGLPSGQI-PPYKKPHDLKKVWKAGVLTGVIKHMSPNFDKIRNHVRKSKCLQDKMTAKESLIWLGVLQREESLVHRIDNGvSEi 299
                           ***********99.9******************************************************************99986335 PP

                           ...XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX...............................XXXXXXXXXXXXXXXXXX CS
                  EIN3 266 ...slrkqspkvtlsceqkedvegkkeskikhvqavktta...............................gfpvvrkrkkkpsesakv 320
                              s+ ++++  t s+++++dv g ++  +++++++++++                               +++   krkk +++s+ +
  Sobic.002G247500.4.p 300 tprSMPEDRNGDTNSSSNEYDVYGFEDAPVSTSSKDDEQDlspvtqsavehvpkrgreraynkhpnqivpgKAKEPPKRKKARRSSTVT 388
                           55588889999999*********999999999999999889999999999999999999999999777776666666666444444444 PP

                           XXX......XXXXXXX.XXXXXXXXXXXXXX CS
                  EIN3 321 sskevsrtcqssqfrgsetelifadknsisq 351
                           +        +    + +++++ ++d+n+++q
  Sobic.002G247500.4.p 389 EPDA----RRVVDAP-ENSRNLIPDMNRLDQ 414
                           4332....2333333.356666777777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.9E-12438286No hitNo description
Gene3DG3DSA:1.10.3180.101.7E-69161293IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167685.89E-60166289IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MDQLAMLATE LGDSSDFEVE GIQNLTENDV SDEEIEPEDL ARRMWKDRVR LRRIKERQQK  60
LALQQAELEK LRPKPISDQA MRKKMSRAHD GILKYMLKLM QVCNARGFVY GIIPDKGKPV  120
SGASDNIRAW WKEKVKFDKN GPAAIEKYDS ENLVTANAQS GGSKNPHSLM DLQDATLGSL  180
LSSLMQHCDP PQRKYPLEKG VPPPWWPSGK EEWWIALGLP SGQIPPYKKP HDLKKVWKAG  240
VLTGVIKHMS PNFDKIRNHV RKSKCLQDKM TAKESLIWLG VLQREESLVH RIDNGVSEIT  300
PRSMPEDRNG DTNSSSNEYD VYGFEDAPVS TSSKDDEQDL SPVTQSAVEH VPKRGRERAY  360
NKHPNQIVPG KAKEPPKRKK ARRSSTVTEP DARRVVDAPE NSRNLIPDMN RLDQVEIQGR  420
SNQIVIFDHG DTTTEALQHR GDAQVQVHLP GAEVNNFNSA PTANPTPISI CMGDQPLPYQ  480
NNDSTRSRSE NSFPVDAHPG LNNLPSSYQN LPPKQSLPLS MMDHHVVPMG IRAPTDSIPY  540
GDHILGGGSS TSVPGDMQQL IDFPFYGDQD KFVGSSFEGL PLDYISISSP IPDIDDLLHD  600
DDLMEYLGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A3e-6416929112134ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.43570.0callus
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00649PBMTransfer from LOC_Os09g31400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G247500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0626360.0BT062636.1 Zea mays full-length cDNA clone ZM_BFb0325I05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462568.10.0ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_021308896.10.0ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_021308897.10.0ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231161e-142EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLC5X3X30.0C5X3X3_SORBI; Uncharacterized protein
STRINGSb02g028390.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-139ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]