PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G248600.1.p
Common NameSb02g028460, SORBIDRAFT_02g028460
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 611aa    MW: 64477.7 Da    PI: 10.525
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G248600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72.1e-112777446
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
       Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                          W t E++ll++av+++G+g+W+++a +++         g+t+ +c++r++ 
  Sobic.002G248600.1.p 27 WGTLEELLLACAVTRHGTGSWDSVAMEVQtrspvaarPGLTPHSCRLRFRH 77
                          9999********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.9E-52381IPR001005SANT/Myb domain
SuperFamilySSF466899.79E-62481IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-52680IPR009057Homeodomain-like
PfamPF002491.2E-92776IPR001005SANT/Myb domain
PROSITE profilePS500906.3652779IPR017877Myb-like domain
CDDcd001671.58E-42761No hitNo description
SuperFamilySSF473705.63E-7253366IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.6E-5284378IPR001487Bromodomain
PfamPF004391.3E-4284354IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MADGSDGTDV SPESEATAAA VKGGEIWGTL EELLLACAVT RHGTGSWDSV AMEVQTRSPV  60
AARPGLTPHS CRLRFRHLHR RFSTVGSGGE EADAEEDPDA SAAEGWVDEL RRLRVAELRR  120
DVERCDLSIG SLQSKVKRLR EERERERSVS GEAKPDEVSV NDRLSSPSEE PGRSCRESNS  180
TDLKPPKHPG GHQGGGGGAK EEEVAKQEAS VESAAASKES SDVRSSASLC RRRSGGSEKA  240
DGEEEEEAAS AARPPPARSP PLASLVDAVS TKLGPVLQRL REHDSEESAA YLGTIRRHVD  300
LESVRRRLDA SAAASRGADD DHHFPARELY RDLLLLCTNA VVFFPRGTPE HAAALKARAI  360
VTGHASAVLH DPKQEHVAVA AAPAPAGADI VGSLIEKGKK PLIVCRKRSS IAKAAAASVR  420
KEESTTMKGE AEAAAEEESE DEKRSVATAT KDKAWGVRTK KSRGGKNSAG PGRNLAKAAA  480
AAADDADGPR KGAGGLAKKR NAVDFLKRLN QSPPRKKRGS GSQLGTTRKR SAAMEQQSTT  540
TRKRGTGRKE GTGRGGSRRG GKAAGTKRGV GRPQKRGPAP ATPPPSKRAK TNGRSDKLSS  600
GTGKRGGRSR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1497517KKRNAVDFLKRLNQSPPRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G248600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462574.20.0uncharacterized protein LOC8055879
TrEMBLC5X3Y20.0C5X3Y2_SORBI; Uncharacterized protein
STRINGSb02g028460.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.18e-11DNA-binding bromodomain-containing protein