PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G253000.2.p

Common Name

Sb02g028870, SORBIDRAFT_02g028870

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NAC

Protein Properties

Length: 312aa MW: 33961.4 Da PI: 9.9147

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G253000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.9	2.4e-33	3	86	49	128
NAM 49 kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ + elvg+kktLvfykgrap+gekt+Wvmheyrl Sobic.002G253000.2.p 3 EKAKLGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIYTGqlpaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 86 45667899***********************************9766666667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	42.336	1	107	IPR003441	NAC domain
SuperFamily	SSF101941	2.88E-39	2	107	IPR003441	NAC domain
Pfam	PF02365	3.4E-16	11	86	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MPEKAKLGEK EWYFFSLRDR KYPTGVRTNR ATNAGYWKTT GKDKEIYTGQ LPATPELVGM 60 KKTLVFYKGR APRGEKTNWV MHEYRLHSKS VPKSNKDEWV VCRVFAKSAG AKKYPSNNAH 120 SRSSHHHHPY ALDMVPPLLP TLLQHDPFAR HHGHHHHHPY MTPADLAELA RFARGTPGLH 180 PHIQPHPGTS AAAAAYMNPA VAAAAPPSFT LSGSGLNLNL GASPAMPSPP QALHAMSMAM 240 GGQTGNHHQV MAGEHQHQHH QQQMATAAGL GGCVIVPGAD GGFGADAAGG RYQSLDVEQL 300 VERYWPAGYQ V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-36	1	113	62	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-36	1	113	62	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-36	1	113	62	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-36	1	113	62	171	NO APICAL MERISTEM PROTEIN
3swm_A	9e-36	1	113	65	174	NAC domain-containing protein 19
3swm_B	9e-36	1	113	65	174	NAC domain-containing protein 19
3swm_C	9e-36	1	113	65	174	NAC domain-containing protein 19
3swm_D	9e-36	1	113	65	174	NAC domain-containing protein 19
3swp_A	9e-36	1	113	65	174	NAC domain-containing protein 19
3swp_B	9e-36	1	113	65	174	NAC domain-containing protein 19
3swp_C	9e-36	1	113	65	174	NAC domain-containing protein 19
3swp_D	9e-36	1	113	65	174	NAC domain-containing protein 19
4dul_A	8e-36	1	113	62	171	NAC domain-containing protein 19
4dul_B	8e-36	1	113	62	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G253000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462604.1	0.0	NAC domain-containing protein 100
TrEMBL	A0A1B6QDF4	0.0	A0A1B6QDF4_SORBI; Uncharacterized protein
STRING	Sb02g028870.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	3e-59	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Sobic.002G253000.2.p
Entrez Gene	8054756