PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G259600.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 206aa    MW: 22495.1 Da    PI: 11.0249
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G259600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.74.7e-36111451128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatg 87 
                           lppGfrFhPtd elvv yL++++ +++l++  vi+ v d+ +++PwdLp    a+e e yfFs  +++ atg+ ++r  + sgyWkatg
  Sobic.002G259600.2.p  11 LPPGFRFHPTDVELVVLYLRRQALARPLPA-AVIPVVhDVARLDPWDLP---GASEGEGYFFSLLRRAPATGRGSRRrRAGSGYWKATG 95 
                           79****************************.8899998***********...3456799*****999999877555546799******* PP

                   NAM  88 kdkevlsk........kgelvglkktLvfykgrapkg.ektdWvmheyrl 128
                           k+k+v+ +        ++ lvg+k+ L+f++ + p + ++t W+mheyrl
  Sobic.002G259600.2.p  96 KEKPVFLQcgggvggkGQLLVGVKTALAFHRSEPPAPsSRTGWIMHEYRL 145
                           *******9888777654555**********9877765169********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-407151IPR003441NAC domain
PROSITE profilePS5100540.44611167IPR003441NAC domain
PfamPF023655.5E-2212145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MERPAQAPTQ LPPGFRFHPT DVELVVLYLR RQALARPLPA AVIPVVHDVA RLDPWDLPGA  60
SEGEGYFFSL LRRAPATGRG SRRRRAGSGY WKATGKEKPV FLQCGGGVGG KGQLLVGVKT  120
ALAFHRSEPP APSSRTGWIM HEYRLAVSRG VAEQREKNAS QVRIPTIIST LRLHCFSLCC  180
EILQSRPLPQ IPQLGVAHTT PNLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-2821456140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.88410.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G259600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0170080.0KM017008.1 Miscanthus lutarioriparius NAC10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460497.11e-112NAC domain-containing protein 83
SwissprotO227984e-40NAC41_ARATH; NAC domain-containing protein 41
TrEMBLA0A1W0W5V81e-146A0A1W0W5V8_SORBI; Uncharacterized protein
STRINGSb02g029460.11e-111(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-22NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]