PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G259600.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 183aa    MW: 19853.9 Da    PI: 11.3999
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G259600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.23.2e-36111451128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatg 87 
                           lppGfrFhPtd elvv yL++++ +++l++  vi+ v d+ +++PwdLp    a+e e yfFs  +++ atg+ ++r  + sgyWkatg
  Sobic.002G259600.3.p  11 LPPGFRFHPTDVELVVLYLRRQALARPLPA-AVIPVVhDVARLDPWDLP---GASEGEGYFFSLLRRAPATGRGSRRrRAGSGYWKATG 95 
                           79****************************.8899998***********...3456799*****999999877555546799******* PP

                   NAM  88 kdkevlsk........kgelvglkktLvfykgrapkg.ektdWvmheyrl 128
                           k+k+v+ +        ++ lvg+k+ L+f++ + p + ++t W+mheyrl
  Sobic.002G259600.3.p  96 KEKPVFLQcgggvggkGQLLVGVKTALAFHRSEPPAPsSRTGWIMHEYRL 145
                           *******9888777654555**********9877765169********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-407150IPR003441NAC domain
PROSITE profilePS5100540.3211167IPR003441NAC domain
PfamPF023653.8E-2212145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MERPAQAPTQ LPPGFRFHPT DVELVVLYLR RQALARPLPA AVIPVVHDVA RLDPWDLPGA  60
SEGEGYFFSL LRRAPATGRG SRRRRAGSGY WKATGKEKPV FLQCGGGVGG KGQLLVGVKT  120
ALAFHRSEPP APSSRTGWIM HEYRLAVSRG VAEQREKNAS QSRPLPQIPQ LGVAHTTPNL  180
LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-2821456140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.88410.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G259600.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0170080.0KM017008.1 Miscanthus lutarioriparius NAC10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460497.11e-112NAC domain-containing protein 83
SwissprotO227982e-40NAC41_ARATH; NAC domain-containing protein 41
SwissprotQ9FY932e-40NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A1W0W5S31e-128A0A1W0W5S3_SORBI; Uncharacterized protein
STRINGSb02g029460.11e-112(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.18e-23NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]